asb5b (asb5,asb5b,LOC107670925,LOC107752221,LOC107676689,LOC107737104)


Basic Information

Item Value
gene id asb5b
gene name asb5,asb5b,LOC107670925,LOC107752221,LOC107676689,LOC107737104
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18858991 ~ 18867807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233920.1
TCGGGGAATAACTGGGCCGGCCTTGCATATGATCCCCAACAACACATCCCTGGATCCCATTCCAAAACATTCACTGTCACTGAGCGGCAGCAATGACTGAGATTTTGGAGGAGCGGCCTTTCGGCTCGCACTACACCAACGTCTATCTCTcgatttttgttcttttttgcttcaaattaTTCCTCAAGATCAGTTTAAACATACTGACCCACTTCTATGCGGTCAAAGGAAACCGTAAGGAGGCAGCCCGGATCGCAGCTGAGTTCTATGATTTTGGCCAAGGGCACAGTTCGTGGGCGGATCGCTCTCCCCTCCATGAAGCTGCGTGTCAGGGTCGACTTCTGGCGCTTAAGACTCTTCTCTCACAGGGATACAGTGCAAATATCATCACCATTGATCATGTGACTCCTCTCCACGAAGCTTGTCTGGGAGATCATGTAGCATGTGCCAGGGCCCTCATAGAAGCTGGTGCCAATGTGAATGCCACGACCATTGATGGCGTGACCCCACTGTTTAATGCCTGCTCGGCAGGAAGTGTCACCTGCACAGAGGTGCTTTTGGAACATGGAGCAAAACCACAGGCAGAAGTGTGCCAGCCTTCACCCATTCACGAAGCCTCCAGCAAAGGCCGAGCAGCATGCATAGAGTCTCTCATCTCCTGGGGAGCAGATGTAGATTATGACATCCCTCATCTAGGAACACCTCTTTACATTGCCTGTGTCTCTCAGCAGCTCCAGTGTACACAAAAGCTTCTGGATGGAGgaGCAAATGTTCAGAAGGGCCGTTTTCTGGACACACCGCTGCATGCTGCAGCACAGAAGGACTGCCCAGAGATCATCAGAGTGCTACTAGACTTTGGCGCTAACATCAACTCTCGCAACCTGGAGCTACAAAGGCCGGTGGAAACAGCGCCACCCAGCAGTGCGGCAGAGGCTGTGCTTCTTCTTTACGAGGCCACGCCGCGGTCGCTCTGTCAGCTGTGTAGACTGAGTATCAGGAACTACATGGGCCGATCCAGACTGCATCTGATTCCTCACCTCAAACTACCTACACTGCTCAAGGGTTTCCTCCAGTACAGATAGATTTTCTGCCTCCAACCATAAACCCCTttccacttttattttcttatattaagTGCATTAATACACAAAAAGGTCACAACCAACGCACAAAAAAGATCATGCTAGCCATTCACACTTCCAagttttatttaactaatatatatttttgtgcaacCAATGTACTTTagttatattattgtaaatatcttCACAAGAGTAAtgtaaatttgtcattttaatctGCATGTtgttatatatcaatataagcTGCATGCCTAATATTTATCACATCAGGATGAAATTATTGAAGCGCATGCCAGtatattgatttttacattttttaccaGAGAAATCTAAAAAAACGATATTCCCAAAAGCACGGTTTTCACAAAATCTAATGCTGTCATTTATTTCCACAGCTTCCCAAGTTAATTGCATCCTGAAAGCCACTGGAATCAATTTAATACTGTATTCTAGCTAAACATTTTGTTGCCAAAACAAAGCATGATATACACAGTAACTTacgcataaataaaaattatatgtaaaattgGACGATTTAATTGGTCTCACTTTTCTTTGTTATTGCTGTTgctactgtaaatgtattattatttcagtccTAATCAATAAACTAATCATTTCATGTTTA
>XM_043233928.1
cagaaaggGTCTGTAGTCACAGTCGCTCTACCCCTTGCAAAGAGGAGGACACAGAGCTGATGCAAACATGCCTGAAGTTCCCCGCAGAGAACCCGAGTACTCAGATAATACTCCCAAGAAAAGAAAGCGTGAGGACGTCGACGatttttctgagaaaaagaaaTCGCGCTGGGGTATTTTGATTAGTCAAGGTTCGTGGGCGGATCGCTCTCCCCTCCATGAAGCTGCGTGTCAGGGTCGACTTCTGGCGCTTAAGACTCTTCTCTCACAGGGATACAGTGCAAATATCATCACCATTGATCATGTGACTCCTCTCCACGAAGCTTGTCTGGGAGATCATGTAGCATGTGCCAGGGCCCTCATAGAAGCTGGTGCCAATGTGAATGCCACGACCATTGATGGCGTGACCCCACTGTTTAATGCCTGCTCGGCAGGAAGTGTCACCTGCACAGAGGTGCTTTTGGAACATGGAGCAAAACCACAGGCAGAAGTGTGCCAGCCTTCACCCATTCACGAAGCCTCCAGCAAAGGCCGAGCAGCATGCATAGAGTCTCTCATCTCCTGGGGAGCAGATGTAGATTATGACATCCCTCATCTAGGAACACCTCTTTACATTGCCTGTGTCTCTCAGCAGCTCCAGTGTACACAAAAGCTTCTGGATGGAGgaGCAAATGTTCAGAAGGGCCGTTTTCTGGACACACCGCTGCATGCTGCAGCACAGAAGGACTGCCCAGAGATCATCAGAGTGCTACTAGACTTTGGCGCTAACATCAACTCTCGCAACCTGGAGCTACAAAGGCCGGTGGAAACAGCGCCACCCAGCAGTGCGGCAGAGGCTGTGCTTCTTCTTTACGAGGCCACGCCGCGGTCGCTCTGTCAGCTGTGTAGACTGAGTATCAGGAACTACATGGGCCGATCCAGACTGCATCTGATTCCTCACCTCAAACTACCTACACTGCTCAAGGGTTTCCTCCAGTACAGATAGATTTTCTGCCTCCAACCATAAACCCCTttccacttttattttcttatattaagTGCATTAATACACAAAAAGGTCACAACCAACGCACAAAAAAGATCATGCTAGCCATTCACACTTCCAagttttatttaactaatatatatttttgtgcaacCAATGTACTTTagttatattattgtaaatatcttCACAAGAGTAAtgtaaatttgtcattttaatctGCATGTtgttatatatcaatataagcTGCATGCCTAATATTTATCACATCAGGATGAAATTATTGAAGCGCATGCCAGtatattgatttttacattttttaccaGAGAAATCTAAAAAAACGATATTCCCAAAAGCACGGTTTTCACAAAATCTAATGCTGTCATTTATTTCCACAGCTTCCCAAGTTAATTGCATCCTGAAAGCCACTGGAATCAATTTAATACTGTATTCTAGCTAAACATTTTGTTGCCAAAACAAAGCATGATATACACAGTAACTTacgcataaataaaaattatatgtaaaattgGACGATTTAATTGGTCTCACTTTTCTTTGTTATTGCTGTTgctactgtaaatgtattattatttcagtccTAATCAATAAACTAATCATTTCATGTTTA

Function

symbol description
asb5b Predicted to be involved in positive regulation of protein catabolic process and protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart; heart rudiment; heart tube; musculature system; and myotome. Orthologous to human ASB5 (ankyrin repeat and SOCS box containing 5).
asb5 Predicted to be involved in positive regulation of protein catabolic process and protein ubiquitination. Predicted to be located in cytosol.

NR:

description
ankyrin repeat and SOCS box protein 5-like isoform X3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10327 ASB5; ankyrin repeat and SOCS box protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233920.1 True 1713 mRNA 0.44 7 18858991 18867807
XM_043233928.1 False 1616 mRNA 0.43 7 18858991 18866550

Neighbor

gene id symbol gene type direction distance location
gpm6ab gpm6ab,LOC107737106,LOC107752222,LOC107670876,LOC107676686 coding downstream 20467 18794142 ~ 18838524 (-)
glra3 glra3,LOC107670853,LOC107737127,LOC107752223,LOC107552004 coding downstream 111278 18708612 ~ 18747713 (-)
hpgd hpgd,LOC107552502,LOC107752225,LOC107676678,LOC107558775,LOC107737128 coding downstream 150513 18701629 ~ 18708478 (-)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 coding downstream 171612 18679667 ~ 18687379 (-)
hand2 hand2,LOC107552491,LOC107752229,LOC107670807,LOC107676684,LOC107558779 coding downstream 237829 18619213 ~ 18621162 (-)
vegfc vegfc,LOC107752233,LOC107670960,LOC107558783,LOC107676691,LOC107737103,LOC107552015 coding upstream 17700 18885507 ~ 18915936 (-)
dctd dctd,LOC107671033,LOC107550883,LOC107684975 coding upstream 578111 19445918 ~ 19464201 (-)
tmem134 tmem134,LOC107737124,LOC107671531,LOC107684976 coding upstream 601696 19469503 ~ 19473821 (-)
stox2a stox2a,stox2,LOC107550915,LOC107748824,LOC107671062,LOC107559650,LOC107684970,LOC108434127 coding upstream 608183 19475990 ~ 19518637 (-)
ing2 ing2,LOC107550937,LOC107671086,LOC107748834,LOC107737097,LOC107684977 coding upstream 653532 19521339 ~ 19523454 (-)
G4413 wdr17,LOC107737118 non-coding downstream 8631 18846669 ~ 18850360 (-)
G4401 NA non-coding downstream 187668 18671018 ~ 18671323 (-)
G4280 NA non-coding downstream 710527 18148154 ~ 18148464 (-)
G4259 ednraa,LOC107598731,LOC107670705,LOC107550651 non-coding downstream 781589 18076973 ~ 18077402 (-)
G4251 NA non-coding downstream 969513 17889148 ~ 17889478 (-)
G4433 NA non-coding upstream 1525 18869332 ~ 18872844 (-)
LOC122332954 LOC108434131 non-coding upstream 545442 19413249 ~ 19440859 (-)
G4590 NA non-coding upstream 660944 19528751 ~ 19529251 (-)
G4596 NA non-coding upstream 672777 19540584 ~ 19541350 (-)
G4597 lgi2b,LOC107671185,LOC107550949,LOC107748826,LOC108263253 non-coding upstream 675169 19542976 ~ 19544360 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 978574 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 1094259 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 1422284 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 2410472 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 2499966 16334202 ~ 16359025 (-)
cdk2ap2 cdk2ap2,LOC107684972 other upstream 668157 19535964 ~ 19539146 (-)
si:dkey-9i23.16 NA other upstream 1269228 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 1421510 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 1499322 20367129 ~ 20369111 (-)
G4958 NA other upstream 1816035 20683842 ~ 20686740 (-)

Expression


Co-expression Network