cdk2ap2 (cdk2ap2,LOC107684972)


Basic Information

Item Value
gene id cdk2ap2
gene name cdk2ap2,LOC107684972
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19535964 ~ 19539146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU6528
AAAATAACATAGCAGGCTAGCACGCGCaggaagagaggagaagagCCGACACCTCCGCGTACCGAAACTCTTCCCGTGCGGTTTATTCTTCATTTACCTCCTCAAACTAGTGTAAAGCGGCGACGAGAAAGCGTCTCGGACTGCCCGGCGTGTCGCGCGGGGTTCGCggttgttgttgtgtgtttgaTTTGTCGGCTCGTTGGATATTTAGCGCGTGTCGCTGTCGAGCGAGTTCGCGGAAGAAGAGGTCGACGTCGTCCCTGCTTCAGACACTAAAGCCCGTCGAGATCGCGTTCAGAAGATAAGCAGAAAGTTTTCATCAAGCGAGGTTACAGTCGACGGCGGTGTAAATATGAGTTACAAGCCGATCGCCCCCGCACCCACCGGCTCCAACCACACTCCGCCAGGATCGTGTGGATCATCTCCATCACTGGCCTCCTCTTCTAACTTTAGACCAGCTTTTAGTGACTTTGGTCCACCATCAATGGGCTTTGTACAACCTGTTAAAGTGTCCCAGGGATCTACCTATAGTGAGCTGCTCTCTGTCATTGAGGAGATGAGCCGTGAAATTCGTCCTACCTATGCTGGCAGCAAAAGTGCCATGGAGAGGCTGAAGAGAGGTATCATCCACGCACGTGCTCTTGTCAGGGAGTGTCTAGCGGAGACAGAGCGAAGTGCTCGCACAtaacatccacacacacacacccccctTTCTCTGGTACTTGTCTCCCCATTGTTCTGTTTCTCATAAACATGCTCCTTCTCTTTGCCAAGCTATTTACAACACCAcgtctttctatctttcttatTGACCTCTGTCCATTATGCATAGCTATCTCCCCAATGTACATCTCATGTAGTGTTAATGCGATTAGCATAGAAATTTTTTAAGCCCAATTTTTGCAattctgtatttaaataaaaaaccaaaaa
>XM_043230490.1
CAGGCTAGCACGCGCaggaagagaggagaagagCCGACACCTCCGCGTACCGAAACTCTTCCCGTGCGGTTTATTCTTCATTTACCTCCTCAAACTAGTGTAAAGCGGCGACGAGAAAGCGTCTCGGACTGCCCGGCGTGTCGCGCGGGGTTCGCggttgttgttgtgtgtttgaTTTGTCGGCTCGTTGGATATTTAGCGCGTGTCGCTGTCGAGCGAGTTCGCGGAAGAAGAGGTCGACGTCGTCCCTGCTTCAGACACTAAAGCCCGTCGAGATCGCGTTCAGAAGATAAGCAGAAAGTTTTCATCAAGCGAGGTTACAGTCGACGGCGGTGTAAATATGAGTTACAAGCCGATCGCCCCCGCACCCACCGGCTCCAACCACACTCCGCCAGGATCGTGTGGATCATCTCCATCACTGGCCTCCTCTTCTAACTTTAGACCAGCTTTTAGTGACTTTGGTCCACCATCAATGGGCTTTGTACAACCTGTTAAAGTGTCCCAGGGATCTACCTATAGTGAGCTGCTCTCTGTCATTGAGGAGATGAGCCGTGAAATTCGTCCTACCTATGCTGGCAGCAAAAGTGCCATGGAGAGGCTGAAGAGAGGTATCATCCACGCACGTGCTCTTGTCAGGGAGTGTCTAGCGGAGACAGAGCGAAGTGCTCGCACAtaacatccacacacacacacccccctTTCTCTGGTACTTGTCTCCCCATTGTTCTGTTTCTCATAAACATGCTCCTTCTCTTTGCCAAGCTATTTACAACACCAcgtctttctatctttcttatTGACCTCTGTCCATTATGCATAGCTATCTCCCCAATGTACATCTCATGTAGTGTTAATGCGATTAGCATAGAAATTTTTTAAGCCCAATTTTTGCAattctgtatttaaataaaaaaccaaaaaaacaaaaa

Function

symbol description
cdk2ap2 Orthologous to human CDK2AP2 (cyclin dependent kinase 2 associated protein 2).

NR:

description
cyclin-dependent kinase 2-associated protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6528 True 933 TUCP 0.25 5 19535972 19539146
XM_043230490.1 False 929 mRNA 0.49 5 19535964 19539134

Neighbor

gene id symbol gene type direction distance location
ing2 ing2,LOC107550937,LOC107671086,LOC107748834,LOC107737097,LOC107684977 coding downstream 12510 19521339 ~ 19523454 (-)
stox2a stox2a,stox2,LOC107550915,LOC107748824,LOC107671062,LOC107559650,LOC107684970,LOC108434127 coding downstream 17327 19475990 ~ 19518637 (-)
tmem134 tmem134,LOC107737124,LOC107671531,LOC107684976 coding downstream 62143 19469503 ~ 19473821 (-)
dctd dctd,LOC107671033,LOC107550883,LOC107684975 coding downstream 71763 19445918 ~ 19464201 (-)
vegfc vegfc,LOC107752233,LOC107670960,LOC107558783,LOC107676691,LOC107737103,LOC107552015 coding downstream 620028 18885507 ~ 18915936 (-)
si:dkey-117m1.4 LOC107671095,LOC107748830,LOC107551007,LOC107674247,LOC107559642,LOC107737095 coding upstream 15294 19554440 ~ 19571705 (-)
cntf NA coding upstream 36068 19575214 ~ 19578675 (-)
zfp91 LOC107671112,LOC107551018,LOC107748831,LOC107674257,LOC107737094 coding upstream 50660 19589806 ~ 19597002 (-)
tesk1a si:ch211-113e8.3,LOC107671138,LOC107551064,LOC107712023,LOC107737090,LOC107674262,LOC107559636 coding upstream 72683 19611829 ~ 19624241 (-)
maml3 maml3,LOC107674228,LOC107737085,LOC107712021,LOC107556508,LOC107671314 coding upstream 125951 19665097 ~ 19757356 (-)
G4590 NA non-coding downstream 6713 19528751 ~ 19529251 (-)
LOC122332954 LOC108434131 non-coding downstream 95105 19413249 ~ 19440859 (-)
G4433 NA non-coding downstream 663120 18869332 ~ 18872844 (-)
G4413 wdr17,LOC107737118 non-coding downstream 685604 18846669 ~ 18850360 (-)
G4401 NA non-coding downstream 864641 18671018 ~ 18671323 (-)
G4596 NA non-coding upstream 1438 19540584 ~ 19541350 (-)
G4597 lgi2b,LOC107671185,LOC107550949,LOC107748826,LOC108263253 non-coding upstream 3830 19542976 ~ 19544360 (-)
G4600 NA non-coding upstream 13482 19552628 ~ 19553146 (-)
G4607 NA non-coding upstream 40418 19579564 ~ 19580861 (-)
G4609 zgc:194443,LOC107559638,LOC107737093,LOC107559639,LOC107674248,LOC107552058,LOC107551053,LOC107551042 non-coding upstream 59064 19598210 ~ 19809631 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 1655547 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 1771232 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 2099257 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 3087445 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 3176939 16334202 ~ 16359025 (-)
si:dkey-9i23.16 NA other upstream 597889 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 750171 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 827983 20367129 ~ 20369111 (-)
G4958 NA other upstream 1144696 20683842 ~ 20686740 (-)
ctnna2 ctnna2,LOC107689479 other upstream 1367024 20906170 ~ 21410571 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_06722991_06725403 CDK2AP2 coding CI01000049 null 6722352 ~ 6725403 (-)