ctnna2 (ctnna2,LOC107689479)


Basic Information

Item Value
gene id ctnna2
gene name ctnna2,LOC107689479
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20906170 ~ 21410571 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7131
GCTGGTGCAACGGTCACTTGTTGTCCATCAGGAAACTGAATGCAACGACTAGGAAAATGACTCGactcgacacacacacagttgcaAGGTTTATTAGAGAATCAGGACTATAAAGGTATGCAGGATTCTACTAGTCTCTGAGCAAACCACACAACTAGTCCTTTTCTAAATGTAATACTATAGCCAACCTGGCTGCCATGGTTAGTGatacagtaatataattaaagaaatggatttttaaatgcaaaaactagTGCATCAGGTCACCATATGTATAACTGGGAAGAAGAAAATTGTTTCAACATAAGTTATTCCTATTACTATGGgtcatgtttcattttaaataataataataataataataaaaaaaaaaatattaggaaGGAAAGCAGCACCTCTGCCTCGATTAGGGCTGACACTACTATACCATAGATTATATTCTTTAATATCTCTGTGTATATACGGCCAGTCAGCGAGAATGAACACCACATGAATTGTACCGCAGCCTGCACTGTAAACGTTTCCTTCaccagtttgtttgtttctcatttaCAGCGAAATTTGGTTCAAAGAGGATGGGTGGCCAAGCCCCCCCAACTCACAGACATTTACTGGGCACATACACACTCGTCGCTGCATGGAACAAGATACAGCTCCAAGAAATTAAGCCGTAAACAAGGAGAGGAGAAGAAATcaagagaggaggaagaggaggaggagtttTGGGTATCTGTGGTGCGGAGTTAAAAGGAGTCCATGGCCTTGAATTCGCTGAGGGCTTGGACGGGTGAGATGTGTTTCTTCTGCGAGCCTCGCCTGACGCGGGTCTGGCACTCCTCCGGTTTCTCTCTCTTCACCAGGGGTTTCTTCTCCGGGGCCTTCATGCGCCAGGACACCACCGGGGAATTGACCGCCGCCGTGCCGTACACCTTCTGGTACTTGGTGGAAGCCACATAGGAGGCCTTGACTGTGAGGACCACGGCATTCATCAAGTTCTTGGCTGCCTGGATGAGGGATGTAGCACTGTCCAGGCAGCCAAGAACTTGATGAATGCCGTGGTCCTCACAGTCAAGGCCTCCTATGTGGCTTCCACCAAGTACCAGAAGGTGTACGGCACGGCGGCGGTCAATTCCCCGGTGGTGTCCTGGCGCATGAAGGCCCCGGAGAAGAAACCCCTGGTGAAGAGAGAGAAACCGGAGGAGTGCCAGACCCGCGTCAGGCGAGGCTCGCAGAAGAAACACATCTCACCCGTCCAAGCCCTCAGCGAATTCAAGGCCATGGACTCCTTTTAACTTCGCACCACAGATACCCAaaactcctcctcctcttcctcctctcttgATTTCTTCTCCTCTCCTTGTTTACGGCTTAATTTCTTGGAGCTGTATCTTGTTCCATGCAGcgacgtgtgtgtatgtgcccAGTAAATGTCTGTGAGTTGGGGGGGCTTGGCCACCCATCCTCTTTGAACCAAATTTCGCTGtaaatgagaaacaaacaaactggtGAAGGAAACGTTTACAGTGCAGGCTGCGGTACAATTCATGTGGTGTTCATTCTCGCTGACTGGCCGTATATACACAGAGATATTAAAGAATATAATCTATGGTATAGTAGTGTCAGCCCTAATCGAGGCAGAGGTGCTGCTTTCCttcctaatattttttttttttattattattattattattattatttaaaatgaaacatgacCCATAGTAATAGGAATAACTTATGTTGAAACAATTTTCTTCTTCCCAGTTATACATATGGTGACCTGATGCActagtttttgcatttaaaaatccatttctttaattatattactgtatCACTAACCATGGCAGCCAGGTTGGCTATAGTATTACATTTAGAAAAGGACTAGTTGTGTGGTTTGCTCAGAGACTAGTAGAATCCTGCATACCTTTATAGTCCTGATTCTCTAATAAACCTtgcaactgtaaaaaaaaaaaaaaaaaaaa
>XM_043243368.1
GTGGTTGGGGATTCGGTGGGAGGGGTCATTATTTGGCAGGGAGCGGCAGAGAGACGAGCATTTCCTAGATACCCACAGCAACGCGTGGATTCATTCCGCTTCCATCACTTCAGAGGCGAGCCGGCGGATTTTCTGGGCTGTTTAAACTTGCTGGCTAGGTTTGGAGAGCTGTCCGTTTGGAAATAAATCCCAGCATCGTGTTTCCTCGGAAGTGTTTTGTTCCTGTACCGGGGCTGTCATCACTGAAGtaaACATGACGAGCGCTACGTCCCCAATCCTGCTAAAATGGGACCCCAAGAGTCTTGAGATTCGCACGTTGACTGTGGAGAGGCTGCTGGAGCCATTGGTTACACAGGTGACCACTCTGGTCAACACCAGTAACAAAGGTCCATCCAGTAAGAAAAAGGGACGCTCCAAGAAAGCTCACGTGCTGGCTGTGTCCGTGGAGCAGGCGACGCAGAACTTCCTAGAAAAGGGCGAGCAGATTGCTAAGGACAGCCAGGACCTGAAGGAGGAGCTTATCGCAGCTGTAGAGGACGTTCGCAAACAAGGTGAGACGATGCGCGTGGCCTCCTCAGAGTTTGCAGATGACCCCTGCTCCTCTGTGAAACGTGGCACCATGGTCCGAGCCGCCCGTGCCCTCCTCTCTGCCGTCACTCGCCTCCTCATCCTGGCTGACATGGCCGATGTCATGAGGCTCCTGGCTCACCTCAAGATCGTGGAAGAAGCTCTAGAAGCTGTGAAGAATGCCACCAATGAGCAGGACTTGGCCAATCGCTTCAAGGAGTTCGGGAAAGAGATGGTCAAACTCAACTATGTTGCTGCTCGCAGACAGCAGGAGCTGAAGGACCCTCAGTGCAGGGACGAGATGGCGGCGGCTCGAGGGGCTCTTAAGAAGAACGCCACTATGCTCTATACTGCCTCCCAGGCCTTCCTGCGCCACCCCGATGTGGCTGCTACACGTGCCAACCGCGACTATGTCTTCAAACAGGTCCAAGAAGCCATCGGGGGCATCTCCAGCTCTGCCCAGGCCACTTCACCCACCGATGAGAAGCACGGGCACGCCGGCATTGGCGAGCTAGCCGCCGCTCTCAACGAGTTTGATaataAGATCATTCTGGACCCGCTAACATTCAGTGAGGCTCGCTTCAGGCCATCACTCGAGGAACGTCTGGAGAGCATCATCAGTGGTGCCGCCCTCATGGCCGACTCCTCCTGCACACGCGACGACCGCCGTGAACGCATCGTAGCCGAGTGCAACGCCGTGCGCCAGGCCCTACAAGACCTGCTGAGCGAGTACATGAACAATAccggaagaaaagaaaaaggagacCCCCTGAATTCAGCTATCGACAAGATGACCAAAAAGACCCGTGATCTACGCAGACAGCTAAGGAAGGCTGTTATGGACCACATATCTGACTCTTTCCTGGAGACCAACGTGCCTCTGCTGGTGCTGATAGAGGCGGCCAAGAGCGGTAACGAGAAAGAGGTTAAGGAGTATGCACAGGTCTTCCGTGAACATGCCAACAAGCTGGTGGAGgTGGCCAACCTCGCCTGTTCCATTTCTAACAACGAGGAGGGGGTAAAGTTAGTGCGCATGGCTGCTACACAGATCGATAGCCTGTGTCCTCAGGTAATCAATGCAGCCCTGACCTTGGCCGCACGCCCTCAAAGCAAGGTTGCTCAGGACAACATGGATGTTTTCAAGGACCAGTGGGAGAAGCAAGTACGCATCCTGACCGAAGCCGTTGATGACATCACTTCAGTTGATGACTTCCTGTCTGTTTCAGAGAACCACATCCTGGAGGATGTGAATAAGTGTGTGATAGCCCTGCAGGAGGGGGATGTGGACACGCTGGACAGAACAGCAGGTGCGATCCGGGGCCGAGCCGCTCGTGTAGTGCACATTATTAATGCTGAGATGGAGAACTACGAACCTGGCGTCTACACCGAGCGTGTCCTTGAGTCCATCAAGCTCCTCTCTGAGACCGTGATGCCGCGCTTTGCAGAGCAGGTTGAGGTCGCCATCGAGGCTCTTAGCACCAGCCCCCCGCAGCCATTCGAAGAGAACGAGTTCATCGACGCCTCTCGCCTCGTTTACGACGGGCGTGACATCAGGAAAGCAGTCCTTATGATAAGAacTCCAGAAGAGTTGGAAGATGACTCTGACTTTGAGCAGGAAGACTATGACGCTCGTAGCCGCACCAGTGTCCAGACAGAAGATGACCAATTGATTGCTGGGCAGAGTGCAAGGGCTATAATGGCTCAGCTGCCTCAGGAAGAGAAGGCCAAGATTGCTGAACAGGTGGAGAGTTTCAGACAGGAAAAGAGCAAGCTGGACGCAGAGGTAGCCAAGTGGGATGACAACGGAAACGACATCATTGTGCTGGCCAAGCAGATGTGTATGATCATGATGGAGATGACTGACTTTACCAGAGGCAAAGGCCCTCTGAAGAATTCCTCTGATGTGATCAATGCCGCAAAGAAAATCGCAGAGGCCGGATCCAGAATGGACAAACTGGCCCGTGCTGTGGCTGACCAGTGCCCGGACTCCGCCTGTAAGCAGGACTTATTGGCATACCTCCAGAGAATCGCCCTCTACTGCCACCAGCTCAACATCTGCAGCAAGGTCAAGGCTGAGGTTCAGAACCTGGGAGGAGAACTCATTGTCTCAGGGCTGGACAGTGCTACATCCCTCATCCAGGCAGCCAAGAACTTGATGAATGCCGTGGTCCTCACAGTCAAGGCCTCCTATGTGGCTTCCACCAAGTACCAGAAGGTGTACGGCACGGCGGCGGTCAATTCCCCGGTGGTGTCCTGGCGCATGAAGGCCCCGGAGAAGAAACCCCTGGTGAAGAGAGAGAAACCGGAGGAGTGCCAGACCCGCGTCAGGCGAGGCTCGCAGAAGAAACACATCTCACCCGTCCAAGCCCTCAGCGAATTCAAGGCCATGGACTCCTTTTAACTTCGCACCACAGATACCCAaaactcctcctcctcttcctcctctcttgATTTCTTCTCCTCTCCTTGTTTACGGCTTAATTTCTTGGAGCTGTATCTTGTTCCATGCAGcgacgtgtgtgtatgtgcccAGTAAATGTCTGTGAGTTGGGGGGGCTTGGCCACCCATCCTCTTTGAACCAAATTTCGCTGtaaatgagaaacaaacaaactggtGAAGGAAACGTTTACAGTGCAGGCTGCGGTACAATTCATGTGGTGTTCATTCTCGCTGACTGGCCGTATATACACAGAGATATTAAAGAATATAATCTATGGTATAGTAGTGTCAGCCCTAATCGAGGCAGAGGTGCTGCTTTCCttcctaatattttttttttttattattattattattattattatttaaaatgaaacatgacCCATAGTAATAGGAATAACTTATGTTGAAACAATTTTCTTCTTCCCAGTTATACATATGGTGACCTGATGCActagtttttgcatttaaaaatccatttctttaattatattactgtatCACTAACCATGGCAGCCAGGTTGGCTATAGTATTACATTTAGAAAAGGACTAGTTGTGTGGTTTGCTCAGAGACTAGTAGAATCCTGCATACCTTTATAGTCCTGATTCTCTAATAAACCTtgcaactgtg

Function

symbol description
ctnna2 Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2).

NR:

description
PREDICTED: catenin alpha-2 isoform X1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K05691 CTNNA; catenin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU7131 False 1982 lncRNA 0.38 3 20906170 21410571
XM_043243368.1 True 3639 mRNA 0.52 19 20928292 21264688

Neighbor

gene id symbol gene type direction distance location
cisd2 cisd2,LOC107552739,LOC107746991,LOC107556804 coding downstream 210403 20693265 ~ 20695767 (-)
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 456051 20445132 ~ 20450119 (-)
LOC122345104 LOC107552254,LOC107664557,LOC107730505 coding downstream 471799 20430808 ~ 20434371 (-)
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 478359 20413591 ~ 20427811 (-)
ctnnd1 ctnnd1,LOC107664559,LOC107746596,LOC107674216,LOC107730519 coding downstream 504454 20377317 ~ 20401716 (-)
LOC122348874 LOC107552383 coding upstream 1292 21411863 ~ 21415844 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 129195 21539766 ~ 21548066 (-)
smox smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173 coding upstream 157531 21568102 ~ 21577369 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 211794 21622365 ~ 21663567 (-)
LOC122342104 LOC107689469,LOC107551743,LOC107719777,LOC797711,LOC107711522,LOC107567046,LOC107692200 coding upstream 265516 21676087 ~ 21679530 (-)
LOC122349798 NA non-coding downstream 187280 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 203872 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 437155 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 445986 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 461376 20442952 ~ 20444794 (-)
G5047 NA non-coding upstream 202347 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 633331 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 937943 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 1001891 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 1024042 22434613 ~ 22438354 (-)
G4958 NA other downstream 219430 20683842 ~ 20686740 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 537059 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 593222 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 765591 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 1367024 19535964 ~ 19539146 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 139046 21549617 ~ 21564077 (-)
G5104 NA other upstream 307568 21718139 ~ 21766284 (-)
G5108 NA other upstream 313816 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 351310 21761881 ~ 21799744 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 848868 22259439 ~ 22328929 (-)

Expression


Co-expression Network