smox (smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173)


Basic Information

Item Value
gene id smox
gene name smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21568102 ~ 21577369 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235439.1
TTCGTGGCGGTACGTCACGGTTCCTCATATTTATTCAGCGAGGAGGCAGCGGCATCGACTAAACTGGCTGCTTCTGGTTTCAAGACACATAAATACAAAGCGAGACGCTGCCTGCGAATATACAAAGAACAGAGGACCGCTCTCCGCTTTACGCTGAAGACGACAAAGTCAGATTCCCTAGAAGAAGAGTTTGGACGGCATGCAAAGTTGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGTGCCTTACAGAGACATCGACAACCGCGAATAGTAGTAATTGGCGCGGGCTTGGCCGGCCTTGCCGCCACCAAAACCCTTTTGGAGAACGGCTTTACCAATGTCACGGTGCTAGAAGCCTCAGACCGTATCGGAGGCAGAGTGCAAAGCATTCAGCACGGTAAAACCACTTTGGAACTTGGAGCAACCTGGATCCATGGTGCAAATGGGAACCCCGTCTACCACCTGGCTGAGGACAATGGACTGCTGGAGCATACCACAGAGGAGGAAAGGAGTGTGGGCCGCATCAGCCTCTATGCCAAGAATGGTGTGGCCCACTATCAGACCAACAATGGCAAGCGGATCCCAAAAGATCTGGTGGAGGAGTTCAGTGATCTGTACAATGAGGTGTACGAGCTGACTCAGGAGTTCTTCCAGAATGGAAAGCCTGTGGGAGCCGAGAGTCAAAACAGTGTTGGGATCTTCACACGAGATGTGGTGCGCAAGAAGATCATGCTCGATCCCTATGACTCAGAAAGCACCAAGAAACTCAAGTTATCTATGCTACAACAGTACCTCAAGGTGGAGAGCTGTGAAAGCAGTTCCCCCAGCATGGATGAAGTGTCTCTTAGTGAGTTTGGTGAGTGGACCGAGATTCCTGGTGCTCACCATGTCATTCCCGCTGGTTTCATTAAAGTCATTGAGATCCTGGCTCAGGACATCCCAAGTCGTGTCCTTCGCCTCAGCAAGCCTGTCCGCCGTATCCATTGGAATTGCAGCTCCCATGATACAGAGGAAATTGTAGACCAGGCTGACCATAACCAGGACCAGCGACCCAGCCCTTCTCCAGTCTGTGTGGAGTGTGAAGATGGCGAGTGTCTGCTGGCAGACCACGTGATTATAACGGCCTCTCTTGGGGTCCTGAAGAAAGCTCACGAGACATTCTTCTCCCCTGGACTTCCACTAGACAAGGCACAGGCTATCCAGAAACTGGGCATTAGTACTACCGACAAGATCTTTCTGGAGTTTGCAGAGCCTTTCTGGAGCCCCGAGTGCAACAGCATTCAGTTTGTGTGGGAGGACGAGGCACAACTGGAGAGCCAGGCATACCCAGAGGAGCTGTGGTACCGAAAGATCTGCAGCTTTGATGTGCTATATCCGCCTGAGCGCTATGGCCACATGCTAAGTGGCTGGATCTGCGGAGAAGAAGCCCTGCGCATGGAAAGATGTGACGACGAGACTGTGGCGGAGATATGCACCGAACTACTGCGTCAGTTCACAGGGAACCAGAATATTCCAAAACCAAGGCGAATCCTGCGCTCCTCGTGGGGCAGTAATCCCTATATCAGGGGTTCTTACTCCTTCACTCGAGTGGGCTCCAGCGGCAGAGATGTGGAGAAGCTAGCTGAGCCCCTGCCTTATATTAAGAACACTAAGGCTCCGCCTCTACAGGTATTGTTTGCTGGGGAGGCCACCCATAGAAAATACTATTCCACTACCCATGGTGCTTTGTTGTCAGGGCAGAGGGAGGCCAACCGCTTGATCGAGCTGTACCAGTACTCCTTCGGTGCAGAAACCACAAAGcctaacatttaaaagaaaccgCAACAAACAAGAACCACTTACTAGTGACAAAAACAACTGTGTTATGTGCTATCTGTATTTCAAATGATGAAATTATGTATGAAAACCTAGTAGGGGCATTaaactaataacaataaatccTCTTTATACCGTACTTAGATTAGTGTTCTGTAGATTTTACTTGAGATGTACTGTACAAGGCTGCCATGTGGCGCTATCTCTGGTCCTTATCattgttttcttgttatttttaatcCATGTTAATATGTTTCTctaatttaacaatttttgtAAGTGCCTTCTGTATTTAATGttgtctttaaaaattaaacaacaaaaaaagacttgaTATGAATAAAGTGTATGTTAATGTGAA

Function

symbol description
smox Predicted to enable polyamine oxidase activity. Acts upstream of or within hemopoiesis. Is expressed in several structures, including anterior axial hypoblast; blood vessel; mesoderm; nervous system; and pancreatic system. Orthologous to human SMOX (spermine oxidase).

NR:

description
PREDICTED: spermine oxidase

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K12259 SMOX, PAO5; spermine oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235439.1 True 2186 mRNA 0.48 7 21568102 21577369

Neighbor

gene id symbol gene type direction distance location
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding downstream 20036 21539766 ~ 21548066 (-)
LOC122348874 LOC107552383 coding downstream 152258 21411863 ~ 21415844 (-)
LOC122349971 lrrtm2,LOC107680618,LOC107750357 coding downstream 183178 21381701 ~ 21384924 (-)
cisd2 cisd2,LOC107552739,LOC107746991,LOC107556804 coding downstream 872335 20693265 ~ 20695767 (-)
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 1117983 20445132 ~ 20450119 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 44996 21622365 ~ 21663567 (-)
LOC122342104 LOC107689469,LOC107551743,LOC107719777,LOC797711,LOC107711522,LOC107567046,LOC107692200 coding upstream 98718 21676087 ~ 21679530 (-)
mogs mogs,LOC107719770,LOC107689467,LOC107551727,LOC107567052,LOC107692169 coding upstream 109858 21687227 ~ 21691373 (-)
si:dkey-56e3.3 LOC107719778,LOC107689468,LOC107552374 coding upstream 130569 21707938 ~ 21712568 (-)
LOC122337558 LOC107552383 coding upstream 136158 21713527 ~ 21734713 (-)
LOC122349798 NA non-coding downstream 849212 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 865804 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1099087 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1107918 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 1123308 20442952 ~ 20444794 (-)
G5047 NA non-coding upstream 35549 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 466533 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 771145 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 835093 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 857244 22434613 ~ 22438354 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 4025 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 157531 20906170 ~ 21410571 (-)
G4958 NA other downstream 881362 20683842 ~ 20686740 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1198991 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 1255154 20289317 ~ 20312948 (-)
G5104 NA other upstream 140770 21718139 ~ 21766284 (-)
G5108 NA other upstream 147018 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 184512 21761881 ~ 21799744 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 682070 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 695449 22272818 ~ 22287521 (-)

Expression


Co-expression Network