G4946 (suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564)


Basic Information

Item Value
gene id G4946
gene name suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20613916 ~ 20702298 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7047
AATTCTTCCTTTCTTGTGGATGTGTCCAGGCATGATCCCGATTTTGCACTCGCCAGATTGATGACACCGGGACAGTTGGGACCGACAAGGCGGGTCTTGCTCTGGCGGAGCAGCTTGTGTTTGACCCGCACCATGTCCTGCTGAGGGATTCCCTCTGTGATACAGACGGCCAGTGGTATCTCTGCGTCAATCGCTTCAATGATGGCAGCTGCCGCGAAAGGAGGCGGCACGTAGATCACGGTGGCATCGGCCCCTGTGCCATTCTtagcTACCTCCTTCACAGAGTTGAAGACTGGCAGACCCAGGTGTGTTTTGCCCCCCTTGCCTGGAGACACTCCTCCTACTAACTGCGAGCCATAGTCCAGAGACTGCTGACTGTGAAAGGTGCcctagagacagagagagaaaacagacatCTTCAGCCAAGCCAGTCAGCTTCTATTAAGACCAAAGGGgggagatagatagatagatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat

Function

symbol description
suclg1 Predicted to enable succinate-CoA ligase (ADP-forming) activity and succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex (ADP-forming). Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 9. Orthologous to human SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha).

NR:

description
PREDICTED: succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7047 True 520 lncRNA 0.53 4 20613916 20702298

Neighbor

gene id symbol gene type direction distance location
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 163797 20445132 ~ 20450119 (-)
LOC122345104 LOC107552254,LOC107664557,LOC107730505 coding downstream 179545 20430808 ~ 20434371 (-)
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 186105 20413591 ~ 20427811 (-)
ctnnd1 ctnnd1,LOC107664559,LOC107746596,LOC107674216,LOC107730519 coding downstream 212200 20377317 ~ 20401716 (-)
LOC122344866 NA coding downstream 237332 20369531 ~ 20376584 (-)
LOC122349971 lrrtm2,LOC107680618,LOC107750357 coding upstream 679403 21381701 ~ 21384924 (-)
LOC122348874 LOC107552383 coding upstream 709565 21411863 ~ 21415844 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 837468 21539766 ~ 21548066 (-)
smox smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173 coding upstream 865804 21568102 ~ 21577369 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 920067 21622365 ~ 21663567 (-)
G4934 NA non-coding downstream 144901 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 153732 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 169122 20442952 ~ 20444794 (-)
LOC122345304 NA non-coding downstream 347733 20265285 ~ 20266183 (-)
G4870 NA non-coding downstream 348847 20199995 ~ 20265069 (-)
LOC122349798 NA non-coding upstream 1178 20703476 ~ 20718890 (-)
G5047 NA non-coding upstream 910620 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 1341604 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 1646216 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 1710164 22412462 ~ 22414007 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 244805 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 300968 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 473337 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 1074770 19535964 ~ 19539146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 2733499 17811459 ~ 17880417 (-)
ctnna2 ctnna2,LOC107689479 other upstream 203872 20906170 ~ 21410571 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 847319 21549617 ~ 21564077 (-)
G5104 NA other upstream 1015841 21718139 ~ 21766284 (-)
G5108 NA other upstream 1022089 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 1059583 21761881 ~ 21799744 (-)

Expression


Co-expression Network