LOC122345304


Basic Information

Item Value
gene id LOC122345304
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20265285 ~ 20266183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250990.1
ATAGAAAGACCCAACTCTAAAACACTTCCTGCGACGATCTTAGACTCCAACCAACACAGAAGACACAATGCGTTCCATCATTTTTGCCCTTCTACTAATGCTGTGCGTGAGATCTGGCAGATTTGCACCATTTGGGATCCACACTATGGATAAAAGGAGTCTAGAAACCTGCAAAAATGTAAGGCTGCAGGCTGAAAGGATAATGGAAATGTTAATCGATCAAAACGTAAGTGCGTAAGTGTGCCATGAATCTTAATCTGTTTTTGGTTGGTTTATAATCTAACGCTAATGccatttgcatatactccagttCACACACACTCCAAGCAGCACTGCCTCTTCAGAAAGTGACTGTGGAGCCGCGAAGTGTGTAGTTTTACAGAAACTTGGTGATTATTATAACTGCGAGATGACATTCCAGAATAATTCCACTAAAATCAAGAATGAAGTTCAAGGCCTAATTGATAACCTGCAGGTAATGAAGTGTTGTAGATGTATGCAGTACATATGTAAATTACACGAGTTACAATGTTTCTTTGTATTTGTAGATGCTCAGATGCTCAGATGAAGAGAACACATGCAATTTATCAGATCCTTCATGTCCCTCGGAAGTTCAAGAACTCTCTTTGTGGGACAAAACTAAAGTGTTTGTGGATAAGGTTGTTTGGGCGTGTTTACATACAATGCAACACGTGTGTCCTAagttgtaaaaagaaaaaattactgGGATatcctaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250990.1 True 739 lncRNA 0.39 3 20265285 20266183

Neighbor

gene id symbol gene type direction distance location
ssrp1b ssrp1,ssrp1b,LOC107746478,LOC107664573,LOC107674244 coding downstream 23431 20230590 ~ 20241854 (-)
p2rx3b p2rx3b,p2rx3,LOC107746906,LOC107674197,LOC107664541 coding downstream 36938 20223700 ~ 20228347 (-)
LOC122345237 NA coding downstream 46642 20217197 ~ 20218643 (-)
tmem187 tmem187,LOC107749980,LOC107679875,LOC107674198,LOC107746454 coding downstream 55592 20208263 ~ 20209693 (-)
ndufs8a ndufs8a,ndufs8,LOC107679876,LOC107746464,LOC107674223,LOC108434795,LOC106602580 coding downstream 65790 20196170 ~ 20199495 (-)
med19b med19b,med19,LOC107551486,LOC107730510,LOC103047628,LOC108412480 coding upstream 15105 20281288 ~ 20283889 (-)
rtn4rl2a rtn4rl2a,rtn4rl2,LOC107746539,LOC107674267,LOC107556816,LOC107551512 coding upstream 60928 20327111 ~ 20331588 (-)
crybb1l2 crybb1l2,LOC107551523,LOC107674249,LOC107730514,LOC107556820,LOC107746545,LOC107664576 coding upstream 78772 20344955 ~ 20348750 (-)
unc93b1 unc93b1,LOC107730513,LOC107664560,LOC107746565,LOC107674251 coding upstream 89052 20355235 ~ 20366551 (-)
LOC122344866 NA coding upstream 103348 20369531 ~ 20376584 (-)
G4870 NA non-coding downstream 216 20199995 ~ 20265069 (-)
LOC122345298 NA non-coding downstream 107762 20155664 ~ 20157523 (-)
G4713 NA non-coding downstream 326884 19938019 ~ 19938401 (-)
G4671 NA non-coding downstream 328526 19936390 ~ 19936759 (-)
G4615 NA non-coding downstream 633032 19631098 ~ 19632253 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding upstream 176769 20442952 ~ 20444794 (-)
G4930 NA non-coding upstream 193358 20459541 ~ 20460184 (-)
G4934 NA non-coding upstream 199979 20466162 ~ 20469015 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding upstream 347733 20613916 ~ 20702298 (-)
LOC122349798 NA non-coding upstream 437293 20703476 ~ 20718890 (-)
si:dkey-9i23.16 NA other downstream 124706 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 726139 19535964 ~ 19539146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 2384868 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 2500553 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 2828578 17434717 ~ 17436707 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 23134 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 100946 20367129 ~ 20369111 (-)
G4958 NA other upstream 417659 20683842 ~ 20686740 (-)
ctnna2 ctnna2,LOC107689479 other upstream 639987 20906170 ~ 21410571 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 1283434 21549617 ~ 21564077 (-)

Expression


Co-expression Network