ndufs8a (ndufs8a,ndufs8,LOC107679876,LOC107746464,LOC107674223,LOC108434795,LOC106602580)


Basic Information

Item Value
gene id ndufs8a
gene name ndufs8a,ndufs8,LOC107679876,LOC107746464,LOC107674223,LOC108434795,LOC106602580
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20196170 ~ 20199495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239153.1
TCTGTGTGTGCACTTCCTCAATCGTCCGCTGTTCTGGTTGAGAAGGCCAAATAGCGAGTGTCCGTACACTTCACTGAGATGTCTGCGGTGTTACGTGTGGTCTACACCGTATCCAGGCCAGGGTCATTTCTGGCCAGTCAAAATCTTGCACGTCCTCTCAGCCTATCCGCACACAGAGCAGGGATTAAGTATGTCAATAATCAGGAGGAGGCCACAGATATGAAGTCCATCACGGACCGTGCTGCTCAGACTCTAATGTGGACAGAGCTGTTCAGAGGTTTGGCAATGACCATGAGCTATCTTTTCGTTGAACCTGCCACAATCAACTACCCCTTCGAGAAGGGCCCTCTATCGCCCCGGTTCCGTGGGGAACATGCGCTCCGCAGGTATCCTTCTGGAGAGGAGCGGTGCATTGCCTGTAAACTTTGTGAGGCCATTTGTCCAGCACAGGCGATCACAATTGAGGCTGAACCTCGTGCTGACGGCAGCAGGAGAACAACGCGTTATGACATAGACATGACCAAATGCATCTATTGTGGCTTTTGCCAGGAAGCCTGCCCTGTGGATGCTATTGTAGAGGGTCCCAACTTTGAGTACTCTACAGAGACCCACGAGGAACTGCTTTATAACAAGGAGAAACTCCTCAACAATGGAGACAAGTGGGAGGCTGAGATCGCTGCCAACATCCAAGCTGACTATCTctacagataaataaatgtccCTGTCTCTATTTCAACACCGTGACAATATACTCTTAACCATGCTCTCTTAACAATATTCACAGTTTCTTTTGCGTATGGAAGATTTGCTTTTTAGATGGTTACTGTTGTGCTGACTGCACATTTTCAAAGCCCAGggactgattttttttgtgaagatgcacataatttttgattatgCATACATGTAGATGATCTGATCTAAAATTAAGTTCACACATTCATGTCCGTAAACTACAGCCTTAAAGTGTGAGTCTCTGTACACCTAAAGCTGTCACTTTGACACAGCATTACCTTCACGGATCAACTGTTGAGGTATGTTGTATAATAAAGTGTCAAAAGGCAGTATAATCAAGTTATCCTTCAAAGCCACCAAGGATGACGCACTACTTTGAGGCTGTTACATTCTCATTTTGAGGCAGTCGATCCATCCTTCCCATTTTTACCCTTCCTTTCAATTTTTGACCATCCAGTGGGTTTAAATTAAAGAGCTGTAAGAAACAAAAGCACTTCGACAGTTGTTGAATATCTCACATTGTATCCTTACAggtaaagacattttatttgtcCTTGTGAGAACTGTACAAAGACTAAATACTTGTGGACcgtatataataaatgaatgctcTGTCCAAATCTTA

Function

symbol description
ndufs8a Predicted to enable 4 iron, 4 sulfur cluster binding activity; metal ion binding activity; and oxidoreductase activity, acting on NAD(P)H. Predicted to contribute to NADH dehydrogenase activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone and mitochondrial respiratory chain complex I assembly. Predicted to be located in membrane. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 2. Orthologous to human NDUFS8 (NADH:ubiquinone oxidoreductase core subunit S8).
ndufs8 Contributes to NADH dehydrogenase (ubiquinone) activity. Involved in mitochondrial electron transport, NADH to ubiquinone; mitochondrial respiratory chain complex I assembly; and response to oxidative stress. Located in mitochondrion. Part of mitochondrial respiratory chain complex I. Implicated in nuclear type mitochondrial complex I deficiency 2.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K03941 NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239153.1 True 1360 mRNA 0.44 7 20196170 20199495

Neighbor

gene id symbol gene type direction distance location
zgc:165520 zgc:165520,LOC107749989,LOC107679874,LOC107552638,LOC107746898,LOC107674222,LOC108262789,LOC108434798 coding downstream 847 20191881 ~ 20195323 (-)
kdm2aa LOC107551394,LOC107674221,LOC107746404 coding downstream 5873 20173861 ~ 20190297 (-)
wu:fc21g02 LOC107749811,LOC107679888,LOC107714230 coding downstream 42287 20148541 ~ 20153883 (-)
vps37c vps37c,LOC107749845,LOC107679880,LOC107551318,LOC107714235,LOC107556517 coding downstream 59619 20130165 ~ 20136551 (-)
LOC122345161 NA coding downstream 67486 20123390 ~ 20128684 (-)
tmem187 tmem187,LOC107749980,LOC107679875,LOC107674198,LOC107746454 coding upstream 8768 20208263 ~ 20209693 (-)
LOC122345237 NA coding upstream 17702 20217197 ~ 20218643 (-)
p2rx3b p2rx3b,p2rx3,LOC107746906,LOC107674197,LOC107664541 coding upstream 24205 20223700 ~ 20228347 (-)
ssrp1b ssrp1,ssrp1b,LOC107746478,LOC107664573,LOC107674244 coding upstream 31095 20230590 ~ 20241854 (-)
med19b med19b,med19,LOC107551486,LOC107730510,LOC103047628,LOC108412480 coding upstream 81793 20281288 ~ 20283889 (-)
LOC122345298 NA non-coding downstream 38647 20155664 ~ 20157523 (-)
G4713 NA non-coding downstream 257769 19938019 ~ 19938401 (-)
G4671 NA non-coding downstream 259411 19936390 ~ 19936759 (-)
G4615 NA non-coding downstream 563917 19631098 ~ 19632253 (-)
G4611 NA non-coding downstream 584655 19608383 ~ 19611515 (-)
G4870 NA non-coding upstream 500 20199995 ~ 20265069 (-)
LOC122345304 NA non-coding upstream 65790 20265285 ~ 20266183 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding upstream 243457 20442952 ~ 20444794 (-)
G4930 NA non-coding upstream 260046 20459541 ~ 20460184 (-)
G4934 NA non-coding upstream 266667 20466162 ~ 20469015 (-)
si:dkey-9i23.16 NA other downstream 55591 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 657024 19535964 ~ 19539146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 2315753 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 2431438 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 2759463 17434717 ~ 17436707 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 89822 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 167634 20367129 ~ 20369111 (-)
G4958 NA other upstream 484347 20683842 ~ 20686740 (-)
ctnna2 ctnna2,LOC107689479 other upstream 706675 20906170 ~ 21410571 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 1350122 21549617 ~ 21564077 (-)

Expression


Co-expression Network