LOC122345104 (LOC107552254,LOC107664557,LOC107730505)


Basic Information

Item Value
gene id LOC122345104
gene name LOC107552254,LOC107664557,LOC107730505
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20430808 ~ 20434371 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238938.1
TGAAAAGTGTGTGGGAGAAGAAATAAGGCGGAAGCAAAGAAGAGTTCAAAGAGGAAAGAATCTGAGGGACACTTAAAGATCAACTGGAGAAGATGATCTGTGGGAGCACAGTAAATAAACTTCTTAAAAAGGACGTTTCTTCAGGACCTTAAGTCTTAGCAATGACTTCCTCATTCCCTCCTAATTCCACCCTCAGTGCAGCCTCAGAGCTCCAGTGCCCTCTTCTGCAAACAATGAGCTCTCACACCTTAAACAAAGACACTGGCATGAACCTGGCAGTGGTGAGCGTTCACGGTGTGGTATCCACTCTCGGGATCCTGGAAAATGGACTAGTGCTGTGGGTTCTTGGTTTCCGTCTTCGTCACAAGACGGTTGCTGCAGTATGGGTCCTCAATCTGGCGTTGTCAGACTTCCTAACCACACTAACCTTGCCGCTTTTCACTCATTACCTAGCGATGAACCACAGCTGGGAGTTGGGTGGTACTTTGTGTGCAGCCCAGGCctccatttttttcctcaacatGTTTGTTTCTGCCTTCCTGCTGGCTGTGATATCATTGGACCGTTGTTTAATGGTGACTAAGCCGGTTTGGACCCAGAACCATCGCACTGTGTCAGCAGCGTGGAAGATCTGCGGTCTAGGATGGGCTTGGGCTATGGTTAACGCAATTCCGTATTTTATGTTCCGTTCCGTAGTGGAAAAGAAGGATGGTCGCAAACTCTGCTATCACAATTTTGCACTCTATTCCTCTTTAAACGCACTACACAGAGACTGTAAGGTGCGTCAGGTTACCACGGCAGTGTCTAAAGTCTTGCTGGCATTTGTCGTACCTCTGACTGTCATCGCCGTCAGTTACACTTCTATTGTTCTTGAACTGCGAGCTCGCAGGAAGAGGCTTGAGCGTCAACGGCAGGGTGGGAGCAAAGGCAAACAGAGGTCCTTGAAATTGTTCCGCAGCCTGTCTTCATCAGACAGACAAAACAGAGTTCACCTCTCGGAAAGTTTTATGAAGATGGTCGTCTCAGTGATCGCAACCTTTATTCTCTGCTGGGTTCCCTACCACGTCTTCTGCTTGCTGGAGGTGATGGCTCAGTACAAGACAGAGATTGTGGAGCTTGTGGAGGTGTACTTACCTGTCGTGACAACTTTTACCTTCCTGAACTCTGTATTGAACCCAATTATCTACACGTTTAGCTGTCCGAACTTCTGCACTCGGATCCGCCAAAGTTTGGGGGCTCTTTTTGAGGGGCTGGTGGAGGAAGCCGGACCCATAGTATGGGTTACAGAAAGGATAAGGAGAAAAGATTCATTGTTCCCATCTTCACCCAACTCTCCCACCCCCACCAAAGTCACCCGCATTCAACAGGGCTTCATAAACCTCTCTGGTTTTAAAAACCGCCCCACAAATGAGGGAGAGAGGGATGACAAAATGTGACTTTATGATGTGAAATATCGTATCCTGGTAGTGACGACTAATGTTTCTGAGTGAACTACGGTTTACCAGCCAGAGGTCACAGTCATGGCATGGCCTTATAAGCTTTTATCTTTTCCGCGTCTCTTTGCTACAATGGGTTTGGTTTAAGCTATAGTCATTCTGGATTACCTCTGAGGTTGTGATTTTGAGAATATTAAAGAGAGTATGTCCCTGTCACtggtaaaaacaaatgaactcaaaaccaAAGCCTCAAACACACAGAAGTCAACATGACCCATATTCCTGTTTCTGTTCTCTCACGCATTGTTCAGATTAGGGaagtaaaatttatttatatagcaccttTTCCAGACAAAAAGTcacaaagtgctttacaaaaatataaataaaaacacatcaaacata

Function

NR:

description
PREDICTED: prostaglandin D2 receptor 2-like

GO: NA

KEGG:

id description
K06715 PTGDR2, GPR44, CD294; prostaglandin D2 receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238938.1 True 1841 mRNA 0.46 3 20430808 20434371

Neighbor

gene id symbol gene type direction distance location
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 2997 20413591 ~ 20427811 (-)
ctnnd1 ctnnd1,LOC107664559,LOC107746596,LOC107674216,LOC107730519 coding downstream 29092 20377317 ~ 20401716 (-)
LOC122344866 NA coding downstream 54224 20369531 ~ 20376584 (-)
unc93b1 unc93b1,LOC107730513,LOC107664560,LOC107746565,LOC107674251 coding downstream 64257 20355235 ~ 20366551 (-)
crybb1l2 crybb1l2,LOC107551523,LOC107674249,LOC107730514,LOC107556820,LOC107746545,LOC107664576 coding downstream 82058 20344955 ~ 20348750 (-)
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding upstream 10761 20445132 ~ 20450119 (-)
cisd2 cisd2,LOC107552739,LOC107746991,LOC107556804 coding upstream 258894 20693265 ~ 20695767 (-)
LOC122349971 lrrtm2,LOC107680618,LOC107750357 coding upstream 947330 21381701 ~ 21384924 (-)
LOC122348874 LOC107552383 coding upstream 977492 21411863 ~ 21415844 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 1105395 21539766 ~ 21548066 (-)
LOC122345304 NA non-coding downstream 164625 20265285 ~ 20266183 (-)
G4870 NA non-coding downstream 165739 20199995 ~ 20265069 (-)
LOC122345298 NA non-coding downstream 273285 20155664 ~ 20157523 (-)
G4713 NA non-coding downstream 492407 19938019 ~ 19938401 (-)
G4671 NA non-coding downstream 494049 19936390 ~ 19936759 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding upstream 8581 20442952 ~ 20444794 (-)
G4930 NA non-coding upstream 25170 20459541 ~ 20460184 (-)
G4934 NA non-coding upstream 31791 20466162 ~ 20469015 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding upstream 179545 20613916 ~ 20702298 (-)
LOC122349798 NA non-coding upstream 269105 20703476 ~ 20718890 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 61697 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 117860 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 290229 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 891662 19535964 ~ 19539146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 2550391 17811459 ~ 17880417 (-)
G4958 NA other upstream 249471 20683842 ~ 20686740 (-)
ctnna2 ctnna2,LOC107689479 other upstream 471799 20906170 ~ 21410571 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 1115246 21549617 ~ 21564077 (-)
G5104 NA other upstream 1283768 21718139 ~ 21766284 (-)
G5108 NA other upstream 1290016 21724387 ~ 21772762 (-)

Expression


Co-expression Network