RNA id: TU7131


Basic Information

Item Value
RNA id TU7131
length 1982
lncRNA type read_through
GC content 0.38
exon number 3
gene id ctnna2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20906170 ~ 21410571 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGTGCAACGGTCACTTGTTGTCCATCAGGAAACTGAATGCAACGACTAGGAAAATGACTCGactcgacacacacacagttgcaAGGTTTATTAGAGAATCAGGACTATAAAGGTATGCAGGATTCTACTAGTCTCTGAGCAAACCACACAACTAGTCCTTTTCTAAATGTAATACTATAGCCAACCTGGCTGCCATGGTTAGTGatacagtaatataattaaagaaatggatttttaaatgcaaaaactagTGCATCAGGTCACCATATGTATAACTGGGAAGAAGAAAATTGTTTCAACATAAGTTATTCCTATTACTATGGgtcatgtttcattttaaataataataataataataataaaaaaaaaaatattaggaaGGAAAGCAGCACCTCTGCCTCGATTAGGGCTGACACTACTATACCATAGATTATATTCTTTAATATCTCTGTGTATATACGGCCAGTCAGCGAGAATGAACACCACATGAATTGTACCGCAGCCTGCACTGTAAACGTTTCCTTCaccagtttgtttgtttctcatttaCAGCGAAATTTGGTTCAAAGAGGATGGGTGGCCAAGCCCCCCCAACTCACAGACATTTACTGGGCACATACACACTCGTCGCTGCATGGAACAAGATACAGCTCCAAGAAATTAAGCCGTAAACAAGGAGAGGAGAAGAAATcaagagaggaggaagaggaggaggagtttTGGGTATCTGTGGTGCGGAGTTAAAAGGAGTCCATGGCCTTGAATTCGCTGAGGGCTTGGACGGGTGAGATGTGTTTCTTCTGCGAGCCTCGCCTGACGCGGGTCTGGCACTCCTCCGGTTTCTCTCTCTTCACCAGGGGTTTCTTCTCCGGGGCCTTCATGCGCCAGGACACCACCGGGGAATTGACCGCCGCCGTGCCGTACACCTTCTGGTACTTGGTGGAAGCCACATAGGAGGCCTTGACTGTGAGGACCACGGCATTCATCAAGTTCTTGGCTGCCTGGATGAGGGATGTAGCACTGTCCAGGCAGCCAAGAACTTGATGAATGCCGTGGTCCTCACAGTCAAGGCCTCCTATGTGGCTTCCACCAAGTACCAGAAGGTGTACGGCACGGCGGCGGTCAATTCCCCGGTGGTGTCCTGGCGCATGAAGGCCCCGGAGAAGAAACCCCTGGTGAAGAGAGAGAAACCGGAGGAGTGCCAGACCCGCGTCAGGCGAGGCTCGCAGAAGAAACACATCTCACCCGTCCAAGCCCTCAGCGAATTCAAGGCCATGGACTCCTTTTAACTTCGCACCACAGATACCCAaaactcctcctcctcttcctcctctcttgATTTCTTCTCCTCTCCTTGTTTACGGCTTAATTTCTTGGAGCTGTATCTTGTTCCATGCAGcgacgtgtgtgtatgtgcccAGTAAATGTCTGTGAGTTGGGGGGGCTTGGCCACCCATCCTCTTTGAACCAAATTTCGCTGtaaatgagaaacaaacaaactggtGAAGGAAACGTTTACAGTGCAGGCTGCGGTACAATTCATGTGGTGTTCATTCTCGCTGACTGGCCGTATATACACAGAGATATTAAAGAATATAATCTATGGTATAGTAGTGTCAGCCCTAATCGAGGCAGAGGTGCTGCTTTCCttcctaatattttttttttttattattattattattattattatttaaaatgaaacatgacCCATAGTAATAGGAATAACTTATGTTGAAACAATTTTCTTCTTCCCAGTTATACATATGGTGACCTGATGCActagtttttgcatttaaaaatccatttctttaattatattactgtatCACTAACCATGGCAGCCAGGTTGGCTATAGTATTACATTTAGAAAAGGACTAGTTGTGTGGTTTGCTCAGAGACTAGTAGAATCCTGCATACCTTTATAGTCCTGATTCTCTAATAAACCTtgcaactgtaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7094 lncRNA downstream 187280 20718232 ~ 20718890 (-) False LOC122349798
XR_006251499.1 lncRNA downstream 187297 20711230 ~ 20718873 (-) True LOC122349798
TU7087 lncRNA downstream 194716 20703476 ~ 20711454 (-) False LOC122349798
TU7047 lncRNA downstream 203872 20613916 ~ 20702298 (-) True G4946
TU7025 lncRNA downstream 437155 20466162 ~ 20469015 (-) True G4934
TU7205 lncRNA upstream 139781 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7183 lncRNA upstream 202347 21612918 ~ 21620581 (-) True G5047
TU7636 lncRNA upstream 633331 22043902 ~ 22044137 (-) True G5327
TU7670 lncRNA upstream 874589 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 874647 22285218 ~ 22287133 (-) False LOC122348696
XM_043242532.1 mRNA downstream 210403 20693265 ~ 20695767 (-) True cisd2
XM_043238579.1 mRNA downstream 456051 20445132 ~ 20450119 (-) True LOC122344926
XM_043238938.1 mRNA downstream 471799 20430808 ~ 20434371 (-) True LOC122345104
XM_043239097.1 mRNA downstream 479174 20413591 ~ 20426996 (-) False cabp2a
XM_043244768.1 mRNA upstream 1292 21411863 ~ 21415844 (-) True LOC122348874
XM_043236036.1 mRNA upstream 129195 21539766 ~ 21548066 (-) False LOC122342190
XM_043236072.1 mRNA upstream 129195 21539766 ~ 21544863 (-) False LOC122342190
XM_043236119.1 mRNA upstream 129195 21539766 ~ 21544863 (-) True LOC122342190
XM_043234720.1 mRNA upstream 139046 21549617 ~ 21564076 (-) True si:dkey-37g12.1
TU7069 other downstream 219430 20683842 ~ 20686740 (-) True G4958
TU6966 other downstream 537076 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 593222 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 766240 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU7255 other upstream 307568 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 308529 21719100 ~ 21723065 (-) False G5104
TU7263 other upstream 309489 21720060 ~ 21766284 (-) True G5104
TU7258 other upstream 310933 21721504 ~ 21723065 (-) False G5104
TU7269 other upstream 313816 21724387 ~ 21772762 (-) True G5108

Expression Profile