RNA id: XM_043236119.1


Basic Information

Item Value
RNA id XM_043236119.1
length 2316
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122342190
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21539766 ~ 21548066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttaGCATTTTTTAAGCCACTCAGAAATcaattttaatgtgtgttttcatcACTATTAAATAACCCAATAGATCGAGGCAAAAATCTGCCAAGATTTCTGTGGAGTCGTGTGGGCACAGATTCGCTGTGTGCCTGGCCAAAGTCTAGCTCATTCTGAGATCGGAACAGAATGCAGTGTGTTTACTGATGTTATCTGTGAAATCCAGACTGTCAATATAGCAGTATCTTTCTACTGCCCGCTTCGGGAAAGCAATTATTTCATCTGATTCACACATTAAGCACAATTTAGAAAACATGTAACCTCTCTGTTATTACCCAGTCTAGCTGACTTTGATGTTTGCATTAGCCttactgaaaaacaacaaacagtgCAGGAAATCTGTTGGATGTGAGGATCATTTGCATAACAATGCCCAACTCTTAATACCCACCATGCAggcacccacacacacacacgccccaCCTACATTCTGATCAAGAGGACTGTTTTAGAGCTTATTAACTTGGCATATTCAAAATATCGCACGCACGGGCACTTTAACATCCTCACCCCACTGATGGAGCTGCCATTTAGTAGAAATGGAGGAGACAAGGTGAATCGGTTAAACATGGCGAAGTAAAGAAAGACGAAACCCGGTTCTTTAGGTGAGTAGATCTCTAATAtgacataacattttttattgtgattataCCAAGCTTAAATATACCTTAAAGGTCATGAACGTGCAATagtaacactaataataattaatacttgtattttaataaatctataattattatattttatttagtattgtGTTTTTACctttcaaatgtatatttttaaagtatatttttagtcTTTAAGCATTCATATCTGCTATGTCTAGATCAACTCCAgcattgttatttatttctttatttttttacgttatCGTGAACGCCGAATGTGAAGTGTTTCCCTTTTGTGACTGACAGGTCTGTTCGTCTCCTCGTTAGTGTGGGAAGGTTGAACAGCATGGAAAACTCCTCGGAATGGAGCAACTTTTCACTCGACTCTGATTTGGAGCCCTGTGCTACGTTGAGGAGCTCCGGCTCGCGAGTCGCCCTCTATGTCTTCATCATCTCTGGGATCGTCTGCACCGTTGTCGGCAACTTCCTGGTGGTGCTCGCCATCGCTTACTTCAAACAGTTGCAGTGTCCTACTAACTCTTTCGTCATGTCTCTGGCTGTTGCTGACTTCCTGGTGGGTCTAGTTGTTATGCCGTACAGTATGGTCAGAACAGTTGAGGGTTGTTGGTACTTCGGCCCAACCTTCTGCCATCTTCACTCCAGCTTGGACGTTATGCTCTGCACGGCCTCCATCTTCCATTTGAGCTGCATCGCTTTTGACCGCTATTACGCCGTCTGCAACCCCTTGGTGTATTCGTTTAAGATGTCCCATAAGCGTGTGGGTCTCCTGATTGTGGTTTGCTGGGCCATTCCTTTCCTCATCTCCTTCTGCCCAATCCTTCTCGGGCTGCACAAGCTAGGTATGGACATTCCTTTGCCTGAAAACGTGTGCATCTTCTTAGTGAACCGCGTTTATGCCGTTATGGCGTCTCTTGTAGCGTTTTATCTGCCTATGGTGACCATGTTGGTGGCCTACTGGAAAATCTACAAAGCTGCAAAGCGGCAAGCCATGCAGATAAGCGCGATGGAGGCGCAGATGGCGGCAGGTGTGGGCAAGGACTCAagcaagaaacaaaaacatcgCAACTCAATAAGGAGGGAAAGAAAAGCAGCCAAAACTCTGGGTATTATCATGGGCGTTTTCCTTCTTTTCTGGTTGCCGTTCTTTACTGTTAATATCGTCGACCCGTTTATTGAGTACGGGACTGCTGCTGTTATATGGGATGTGTTCCTGTGGTTGGGGTATGTCAACTCCTCCCTAAACCCTTTCCTCTATGGCTTCTTTAACAGGTCCTTCCGTAGGGCTTTCCTCATGATAATGGGCTGCAGAATATGTCTGCCTGGCACAGCTCAAGGAATGGACCTCTCTCACTCGAAAAGAGATGTCACTGACAACCAGTAGACTGTAGTGGAAGTTGTCatctgttttaatgaaatgttccTGTCCAGCCCATATGgcaaactatatataaaatattgttcaaaTATAGACTTTACCACATATGCCTTATTCCAATGTTACAGTAGAACAGGAGCAGTTACATATAACTTATATACTTTGCTTTATATACTTAAATCCAAGAAAATGCATTCACatgttacatttaaagaaaaacaaatgcgttctgtgtatatttattatgtataaagacacatacatgc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG:

id description
K22790 Octbeta; octopamine receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7131 lncRNA downstream 129195 20906170 ~ 21410571 (-) False ctnna2
TU7094 lncRNA downstream 820876 20718232 ~ 20718890 (-) False LOC122349798
XR_006251499.1 lncRNA downstream 820893 20711230 ~ 20718873 (-) True LOC122349798
TU7087 lncRNA downstream 828312 20703476 ~ 20711454 (-) False LOC122349798
TU7047 lncRNA downstream 837468 20613916 ~ 20702298 (-) True G4946
TU7205 lncRNA upstream 5489 21550352 ~ 21551235 (-) False si:dkey-37g12.1
TU7183 lncRNA upstream 68055 21612918 ~ 21620581 (-) True G5047
TU7636 lncRNA upstream 499039 22043902 ~ 22044137 (-) True G5327
TU7670 lncRNA upstream 740297 22285160 ~ 22287133 (-) False LOC122348696
TU7671 lncRNA upstream 740355 22285218 ~ 22287133 (-) False LOC122348696
XM_043244768.1 mRNA downstream 123922 21411863 ~ 21415844 (-) True LOC122348874
XM_043246136.1 mRNA downstream 154842 21381701 ~ 21384924 (-) True LOC122349971
XM_043243368.1 mRNA downstream 275078 20928292 ~ 21264688 (-) True ctnna2
XM_043242532.1 mRNA downstream 843999 20693265 ~ 20695767 (-) True cisd2
XM_043238579.1 mRNA downstream 1089647 20445132 ~ 20450119 (-) True LOC122344926
XM_043234720.1 mRNA upstream 4754 21549617 ~ 21564076 (-) True si:dkey-37g12.1
XM_043234870.1 mRNA upstream 4754 21549617 ~ 21564074 (-) False si:dkey-37g12.1
XM_043234681.1 mRNA upstream 6937 21551800 ~ 21564076 (-) False si:dkey-37g12.1
XM_043234793.1 mRNA upstream 6938 21551801 ~ 21564074 (-) False si:dkey-37g12.1
XM_043234958.1 mRNA upstream 7298 21552161 ~ 21564077 (-) False si:dkey-37g12.1
TU7069 other downstream 853026 20683842 ~ 20686740 (-) True G4958
TU6966 other downstream 1170672 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 1226818 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 1399836 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU7255 other upstream 173276 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 174237 21719100 ~ 21723065 (-) False G5104
TU7263 other upstream 175197 21720060 ~ 21766284 (-) True G5104
TU7258 other upstream 176641 21721504 ~ 21723065 (-) False G5104
TU7269 other upstream 179524 21724387 ~ 21772762 (-) True G5108

Expression Profile