tnip2 (tnip2,LOC107670772,LOC107742537,LOC107665480,LOC107598727,LOC107734553)


Basic Information

Item Value
gene id tnip2
gene name tnip2,LOC107670772,LOC107742537,LOC107665480,LOC107598727,LOC107734553
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18309603 ~ 18314300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237274.1
GTGGCGATCTTCCTAAACCCGATATCGTACCGACGAGAGCGGCAACTGCCTCTAAAACGTGTCAAATCTCAATCAAACCACACACGAATCGACCATTAACTTTCGTGATGCCAAAATAGGGGCCGTTACCGAACTATTTTTCGACGTTTAACGCGAAGTACGAGAAAAAATATACCCAATTTGAGACGGGGAAGTCCCCGCGAGGAAATCCCCTCTTCATAAGATAATTTCGAAATTGAGTGAGGCTCTCGCAGGCTGAAGCTTTTCGCCTTTGGTCTACAGCAGACGCATGTAGTGAGCCCATGACACTCAAACCCGTGCAATCTATGGGAAAATTGAACtttacgtttttgttttaacGCGCCGGCGGATTGTTCAGAATGGATGAGATCAAGAGGGAGAACGACGCGCTGAGGGCGAAGCTGCGCGGCTGCTCTACGCTCAATACATGTTACCACGAAACACAACAAGAAATTGTTCGTTTAAACCAATTGGTGACCTCCAAAGACGGAATTATTGCCGATTTGAGGGCAAGACTGGGGAAGTACGAGAAAACGGTGGTCATGGAGGGAGAGGAGCCCTGTATTTTAGGGCCGTCGAAATCTCTCATCGAGAGCTTGTGTAAGGAAATTtgcaaattaaagcaaaagcTGAAGGAATCAGAGGCGGACGCCACCCAGAGATTGCAAACCAATAAAACAgAGATCCAAAGGTTGCAAGAAAAGCTGAAGGAGAAGGATCAAGAGCTGGAGACCATCAGGGAAAGGCCCGAccaggaaaaagaaagagaaattcATCGACTGCGCTCCACATTGGCCGAGAACGATCGGACACATGCCACCAGGGTCGTCCTCTGCAACTCTCTTGCTGAAGAAACCGAGCAGTTGAGGGCGCAGCTGGGGGCCACCGTGCAGGTGTGCCAGGAGCTTTTGGGACggctggagaaagagagaagcaaGACGGCCACGACGGACCAGAGAACTGAAGCAAACGAGACAAAAGATTCCCCTGAGCTTCCCCGTCTAAATGTCATCAGCAAGTTAGAAGAGGAAAACGACCAGCTTAAAAAGAGAGTTGCATATGTGGAAAGTTTAAACTCAAAGTGGCAGAAGTACGACTCCAGTAGAGAAGAGTATGTGAGGGGTTTGTGTCAGAAGTTGAAAGAGTCAAACGGCCTGGCATCCGCAGATCCGACCCTGACCCAAACTCCGGCTGCAGGCAACGTGGCTTTGTTCCAGCAGGAGATCACACGACTCAACGGCCTCCTGCAGGACAAGATGATGGAGTGCGAGAGGCTCGGCAGAGAGAGGGATGGCGGCAAAAGAGACCAGGAGCGCATTCAGATGCTCGAGCAACagGTTTTGGCCTATATTGAGGACTTCAAATCAGAGAGGGCAGACCGAGAAAGGGCACAGGGTAAAATCCTGGACCTTCAAGATGAAGTCGGGCGACTTCAACTGCAAATACGCACACAGAGCGTCCAAGATGCCTCATCCTCACGGCGACTTCACATGGGTCTAAAAAAAATTCCCCACCGACAGACGGACACTGCGGAACCACGAAGGAACAGTCCCCCAGAATCAAGCTCAAAGAGGACTATCAGTAACACGGCGCCGCAGGGAGCCGCTGCACTGCAGTGCCCTCGCTGTCTCACCACGTATGACGACGAGCACGCGACCGAATACCTAAACCACTGGGACGAGTGTGCCAAGCTGTGAGTCTCTCACCTCACTGACTTTTCACAGGGCACAGAAAGCACTGAGGACAGAATCACTACAGGCTGGCAGACTATGGGATGTTTGACAGGGTGTTGATGAAGGCGGCGGCACGTTTAAACAGGATGGAGTCAAAGGAAGAGCtcgtttcgtttttttatttttaggcttTGCTTTTCGATTGTGGGCTTGGTTGATGTTTAGAAGGTCGCTCGTGGCGTAGGACTCAAGACATGACTTTGGGTTGGTCATTTACAGTTTAAAGGCTTACTCACTGAACGCAGATGCTTTGGTTACGAaaagttatttaatttcaaacatttGTGGTTTATAAGTCACTGGGTTCGTCACTTGTTTGGTTTCATGGTTTTCAGCTTGGCACATTTTGTCTAAGCGTTTTAATCAAATTTGACTTATTACTGTATTGCAGATCCGTGTATAATTCAGATGGATGGTAAAACTGGTATCATATACCTCACCGATATGTATTCTCTTCATCAGCTGGTTtgcactttttgcttttaattattgCTAAATACAGatgataaaagtacattttcctatttaataCATAAGCTTCTTTATTATTAGACTGTTGAATAATTCATACGCTTGTTATGGTGCTATTTGTAAagattgttgttatatttttatatttcctttttCGTCTTTTTGTAAGAATATGTTATTTGCCTTgggattacattttaaatcagaaattttaatttgtatcaATGTACAGAGCAGCACAGCGCACACTATTaataatcttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacacacacacacacacacaattgtaaatgttaaaatgctctGTCATACAAGATGTCATTACATTCTCAAGAGTTTAAGGCACCTTTTGACTGTGAGGTACTTGCCATTCTGATCCCCCTCTGCAGTTGAAAACATTCTAGTTTTAAGTAAGAGAGGAAGTTCCCTACATCCTGGTAAATTGAGACGTGAAATTTTCACATCTTAGATGCTGCCTATGACAAGATGGCCTCCTATTGCTGCACATTTAAACACTTGATCAGGATTTTAAGGCActaacagcaaaaaaattaattgacaataaaaagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcacagagATGCCAAACTAAGACATGAGCAATGTGGTAACTACaggaagatttatttttataataaaaatatacgcTTAAGGACTCTTTTTGAAGCCGTGTAATCTTGTTCGTGTCTGTGAGTGTTTGTAcagtcaaaatgtaatttttagtaAGATATGGGAAACCAGACACGAGAGAGTTGTGATAACGCTGGCAAGATCATGAGGCATAGTGTGTCATAAAGCATTAAACTCAAGTCCCATGGga

Function

symbol description
tnip2 Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and metal ion binding activity. Predicted to be located in cytoplasm. Orthologous to human TNIP2 (TNFAIP3 interacting protein 2).

NR:

description
PREDICTED: TNFAIP3-interacting protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237274.1 True 3214 mRNA 0.42 6 18309603 18314300

Neighbor

gene id symbol gene type direction distance location
nr3c2 nr3c2,LOC107550687,LOC107670737,LOC107742541,LOC107654985 coding downstream 91323 18153693 ~ 18218280 (-)
prmt9 prmt9,LOC107742543 coding downstream 208008 18094184 ~ 18101595 (-)
LOC122348811 LOC107551967 coding downstream 523268 17784173 ~ 17786335 (-)
LOC122348788 LOC107742553,LOC107684450,LOC107551967 coding downstream 537150 17771254 ~ 17772453 (-)
si:dkey-27h10.2 NA coding downstream 655117 17640900 ~ 17654486 (-)
scpp1 LOC107670780,LOC107550759,LOC107734555,LOC107742551 coding upstream 1405 18315705 ~ 18318081 (-)
hmgb2a hmgb2a,LOC107752228,LOC107670798,LOC107550776,LOC107676685,LOC107558777,LOC107737109 coding upstream 284052 18598352 ~ 18600697 (-)
hand2 hand2,LOC107552491,LOC107752229,LOC107670807,LOC107676684,LOC107558779 coding upstream 304913 18619213 ~ 18621162 (-)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 coding upstream 365367 18679667 ~ 18687379 (-)
hpgd hpgd,LOC107552502,LOC107752225,LOC107676678,LOC107558775,LOC107737128 coding upstream 387329 18701629 ~ 18708478 (-)
G4280 NA non-coding downstream 161139 18148154 ~ 18148464 (-)
G4259 ednraa,LOC107598731,LOC107670705,LOC107550651 non-coding downstream 232201 18076973 ~ 18077402 (-)
G4251 NA non-coding downstream 420125 17889148 ~ 17889478 (-)
G4195 NA non-coding downstream 698298 17610874 ~ 17611305 (-)
G4072 LOC107661227 non-coding downstream 1023596 17285648 ~ 17286007 (-)
G4401 NA non-coding upstream 356718 18671018 ~ 18671323 (-)
G4413 wdr17,LOC107737118 non-coding upstream 532369 18846669 ~ 18850360 (-)
G4433 NA non-coding upstream 555032 18869332 ~ 18872844 (-)
LOC122332954 LOC108434131 non-coding upstream 1098949 19413249 ~ 19440859 (-)
G4590 NA non-coding upstream 1214451 19528751 ~ 19529251 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 429186 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 544871 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 872896 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1861084 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 1950578 16334202 ~ 16359025 (-)
cdk2ap2 cdk2ap2,LOC107684972 other upstream 1221664 19535964 ~ 19539146 (-)
si:dkey-9i23.16 NA other upstream 1822735 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 1975017 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 2052829 20367129 ~ 20369111 (-)
G4958 NA other upstream 2369542 20683842 ~ 20686740 (-)

Expression


Co-expression Network