G209452


Basic Information

Item Value
gene id G209452
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 5881416 ~ 5885107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU237600
CTGCAACACAATTCCAGTAAAAAATAAAGACTCACAATGATTACGATTGTGCAATCAAAACTAAAATAACAATGGCAATTTAAATTTTATAAATTAGAGTTATTAATTCTAAATAATTAGTATACTTGTAAATTCTGTTCAATGCTTGCCTCATTAAATCTTGTGATCATTTTCCCCTTTTTAACATCCCAAATGAAGGCGCCATTTCTTGACGTAGCACCTGCTATGCAGTTCAAGTCTCCAGGGGCCCAGGACAGAGAGTAAACCACTCCCTCATTGCCTGGAGATGTGTACACAGCAGTTAAGGTGTTTATATCCCAGACTTTTATCGTCCCATCAAATGAAGCTGTAGCTAGAATGTTTGGGTCATCTGGCTTGAATTTGCAGTCAAAGATAGTTTCAACATGACCCAGATCCCGCAGGAAGTCCCACTTTTTGGCACCCATGTCATACAGCCCGACACCCCCATCCATGAAACAGCAGACAGCATGGCCGGGTGGGAGAGAGAAGGCCTGGTTCTGTGAAAGAGTAGGTGGAGGCACAGCCTCGCTAGTGGAGGAGGTGTAGTGATTCTTGGAAGGGGAATTTGAGCTAAACGCTAAGAGAGAGATAACACCAAAATCAAGTCATTGTGATGGAGTACACAAACCCAGACACATATACATAAGTGCTAAATGGTAAACACGAAAACACATACATTTCTTTGCTGGCGGAGAATTTAAAACATGAAGTGCATGGAAGCCGGTTTTCTTCAGTTTGAAGTTATCCAGAGGTGTCGCTCTCGATACGTTCCATATTCTTAGCACGCCAACTTGAGAATCTTGAGAATTCAATATAATAGTATAAACATTTTTTAGTTATGCGAATATGCACAAATATGACTGAGCATTCCAT
>TU237601
CTGCAACACAATTCCAGTAAAAAATAAAGACTCACAATGATTACGATTGTGCAATCAAAACTAAAATAACAATGGCAATTTAAATTTTATAAATTAGAGTTATTAATTCTAAATAATTAGTATACTTGTAAATTCTGTTCAATGCTTGCCTCATTAAATCTTGTGATCATTTTCCCCTTTTTAACATCCCAAATGAAGGCGCCATTTCTTGACGTAGCACCTGCTATGCAGTTCAAGTCTCCAGGGGCCCAGGACAGAGAGTAAACCACTCCCTCATTGCCTGGAGATGTGTACACAGCAGTTAAGGTGTTTATATCCCAGACTTTTATCGTCCCATCAAATGAAGCTGTAGCTAGAATGTTTGGGTCATCTGGCTTGAATTTGCAGTCAAAGATAGTTTCAACATGACCCTGTGACAAAAAGAATGTCACAAAGTCATGCATGTTTGTATTATAATAATATAATCATTATGATGGCAAAACGAAACTCTTAAAAATGATCTACGTTAATTGAAATGAAGCCGAAATAAAATATAAGGTTACACTTTATTTCGATAGCCCACTTTAGACATTCTACTTACTATAACTAACTTTGCAACTACATGTCAACTAACTCTCAGAGTATCAGTAGACTGTTAGGTTGGGGTTGTGGCCTTATGTCTCACACGGGACGAAGATGATTAAGCAAGTAAGTAAGTTATGTTAGGGTTAGGGTTAGGAGAATAAGTTGACATGCACTTGCAAAGTTACTAATAGTCAGTGTTAAGCCTGGGGTACTCTAAGCCGATGGTCGGCCATCGGGCAATTTCATCTCATTTGAACAGTGGATTATTTTAATAATAACCAAGGGTTGACAATGCCAGTGACAGCTTAGCAGACATACTTGAAAAGGCTACACAAATCCTTCAATTATGAGCAAGACTGGTGTAAACAATGGTAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237600 False 894 lncRNA 0.41 3 5881416 5885107
TU237601 True 942 lncRNA 0.37 2 5884045 5885107

Neighbor

gene id symbol gene type direction distance location
CI01000049_05807016_05816424 GPM6AA, DMB, GPM6A, GPM6AB coding downstream 64992 5806494 ~ 5816424 (-)
CI01000049_05664017_05705638 GLRA3 coding downstream 175778 5663752 ~ 5705638 (-)
CI01000049_05649195_05660180 HPGD coding downstream 220325 5649051 ~ 5661091 (-)
CI01000049_05614731_05618336 FBXO8 coding downstream 263080 5613256 ~ 5618336 (-)
CI01000049_05535991_05536989 HAND2.S, HAND2, HAND2.L coding downstream 343932 5535475 ~ 5537484 (-)
CI01000049_05901108_05909136 ASB5B, ASB5 coding upstream 15553 5900660 ~ 5909185 (-)
CI01000049_05926968_05969885 VEGFC coding upstream 41576 5926683 ~ 5970122 (-)
CI01000049_06427734_06436267 NA coding upstream 542474 6427581 ~ 6436985 (-)
CI01000049_06621205_06636088 NA coding upstream 736082 6621189 ~ 6636088 (-)
CI01000049_06650349_06653460 TMEM134 coding upstream 765136 6650243 ~ 6653793 (-)
G209238 NA non-coding downstream 233893 5645999 ~ 5647523 (-)
G209241 NA non-coding downstream 235695 5645321 ~ 5645721 (-)
G209342 NA non-coding downstream 305514 5575289 ~ 5575902 (-)
G209337 NA non-coding downstream 316153 5565014 ~ 5565263 (-)
G209243 NA non-coding downstream 348744 5525651 ~ 5532672 (-)
G209455 NA non-coding upstream 1300 5886407 ~ 5887451 (-)
G209465 NA non-coding upstream 25311 5910418 ~ 5911476 (-)
G209491 NA non-coding upstream 143127 6028089 ~ 6028469 (-)
G209503 NA non-coding upstream 179679 6064786 ~ 6065046 (-)
G209508 NA non-coding upstream 190399 6075506 ~ 6076086 (-)
G207278 NA other downstream 3892649 1987011 ~ 1988767 (-)
G206938 NA other downstream 5053771 825859 ~ 827645 (-)
G206850 NA other downstream 5248221 632680 ~ 633195 (-)
G206849 NA other downstream 5249840 631143 ~ 631576 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 2170526 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 2566035 8451142 ~ 8454233 (-)
G211175 NA other upstream 2580186 8465293 ~ 8476265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G4413 wdr17,LOC107737118 non-coding NC_056699.1 CM032068.1 18846669 ~ 18850360 (-)