G209465


Basic Information

Item Value
gene id G209465
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 5910418 ~ 5911476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU237616
AAAGAAAGAGCTCCTTCACATTCCAGTCAAATATTGGCTGCAGATGTAATAAAGCGGTAAAGGCAAATAGTGTAATCAGTTCTAGTTGTAAACTGCACTGCAAAGCTGATATGGAAGCTGCATCTGAATTGGCACGTATTGTGCACCGAGGTGGCATAAATGCATTCACACAGGAATTACATTTGCAGAAATAATGGTAAATATGTAATGATTAATACAGAACACACGAAATTGTAAATAAAAATCCGAAAAACTATGGCTTAGAGTGATTAAATTTTCATCTACATGGTGGTAATTGTGTGGCACAGCAGTGGTCTGTTTTGTCAAAAGGATATTAGCAGAAAGGTCAAATGTCACAAAGCCCAAGTCACTCCTCTCTCGTGGTCCTGTGAAGTCGTCTACATTTTTACTGTTTTTTAATGATCTTAACATTGATTTTGTATTGAACCTTTGATCGCAGGCTCAGAAACAGTGCAGTTAACTTACAGCATGACTTTGGATACGTGTATATCCACCGGTACGCTTCTGTCTTTGAACGCTGTAGTAATGAAGCATCCGAATGTGAGCGCGGCCATCACACTGAGAGAGAAGGCGAAGAGCGAGTTCGCCCTCGACAATACCGTATTCATGATTCAATCTAGTTAACAACTAACAATGTATTGCAAAACAAAGATATAAAGAAACGCTCCGAGCGGAGGTTCAAAGCAGGAAGTGAGGCAGCTTCAAAGATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU237616 True 731 lncRNA 0.40 2 5910418 5911476

Neighbor

gene id symbol gene type direction distance location
CI01000049_05901108_05909136 ASB5B, ASB5 coding downstream 1233 5900660 ~ 5909185 (-)
CI01000049_05807016_05816424 GPM6AA, DMB, GPM6A, GPM6AB coding downstream 93994 5806494 ~ 5816424 (-)
CI01000049_05664017_05705638 GLRA3 coding downstream 204780 5663752 ~ 5705638 (-)
CI01000049_05649195_05660180 HPGD coding downstream 249327 5649051 ~ 5661091 (-)
CI01000049_05614731_05618336 FBXO8 coding downstream 292082 5613256 ~ 5618336 (-)
CI01000049_05926968_05969885 VEGFC coding upstream 15207 5926683 ~ 5970122 (-)
CI01000049_06427734_06436267 NA coding upstream 516105 6427581 ~ 6436985 (-)
CI01000049_06621205_06636088 NA coding upstream 709713 6621189 ~ 6636088 (-)
CI01000049_06650349_06653460 TMEM134 coding upstream 738767 6650243 ~ 6653793 (-)
CI01000049_06665198_06670691 STOX2A, STOX2 coding upstream 753525 6665001 ~ 6671560 (-)
G209455 NA non-coding downstream 22967 5886407 ~ 5887451 (-)
G209452 NA non-coding downstream 25311 5881416 ~ 5885107 (-)
G209238 NA non-coding downstream 262895 5645999 ~ 5647523 (-)
G209241 NA non-coding downstream 264697 5645321 ~ 5645721 (-)
G209342 NA non-coding downstream 334516 5575289 ~ 5575902 (-)
G209491 NA non-coding upstream 116758 6028089 ~ 6028469 (-)
G209503 NA non-coding upstream 153310 6064786 ~ 6065046 (-)
G209508 NA non-coding upstream 164030 6075506 ~ 6076086 (-)
G210739 NA non-coding upstream 334794 6246270 ~ 6246498 (-)
G210742 NA non-coding upstream 338659 6250135 ~ 6250338 (-)
G207278 NA other downstream 3921651 1987011 ~ 1988767 (-)
G206938 NA other downstream 5082773 825859 ~ 827645 (-)
G206850 NA other downstream 5277223 632680 ~ 633195 (-)
G206849 NA other downstream 5278842 631143 ~ 631576 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 2144157 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 2539666 8451142 ~ 8454233 (-)
G211175 NA other upstream 2553817 8465293 ~ 8476265 (-)

Expression


Co-expression Network