G5445 (mcf2l,LOC107746267)


Basic Information

Item Value
gene id G5445
gene name mcf2l,LOC107746267
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22681649 ~ 22682096 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7825
AGCGTCCATCGTCTCCCTCCTTTACAAGCTGCACTGAGTCTCCGCTCTTCACCGTCAGCTCCTGTGGTCCGTTTTTATCATGGTCAGCAACTACCACGTACCTGcctggagacaGTTTTTTCCCTCCCTCATCCTCAGGATCAGAGTTCATGGGGTCCTCGGCGCTCGAGTAACCGTCGTTCTCCTCAGACGCGTCCACAGACAGCGATGCCTTGGAGAAGCCTTGTGAAAGAGAGGATGAGTATAACAAGTGTGACATTTGGCTCACGGTGAGACGATGAAAGACACGGATGAGTGGTGCTCCACAAAGATGGTGTGCGTGGAAGGTGAAGAAGAG

Function

symbol description
mcf2l Enables guanyl-nucleotide exchange factor activity and phosphatidylinositol binding activity. Involved in positive regulation of Rho protein signal transduction. Located in cytoplasm and endomembrane system. Is extrinsic component of cytoplasmic side of plasma membrane.

NR:

description
PREDICTED: guanine nucleotide exchange factor DBS isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7825 True 337 lncRNA 0.53 2 22681649 22682096

Neighbor

gene id symbol gene type direction distance location
pnpla6 pnpla6,LOC107712242,LOC107676850,LOC107718547,LOC107692140 coding downstream 269951 22385513 ~ 22411698 (-)
c1h19orf67 LOC107712227,LOC107676872,LOC107561872 coding downstream 345357 22332974 ~ 22336292 (-)
serhl serhl2,LOC107603032,LOC107718629,LOC107692145,LOC107561867 coding downstream 388288 22288682 ~ 22293361 (-)
LOC122348711 atf7ip,LOC107712238,LOC107676868,LOC107692147 coding downstream 410915 22240381 ~ 22270734 (-)
grin2bb grin2bb,grin2b,LOC107676879,LOC107551907,LOC107692185,LOC107603025,LOC108258482 coding downstream 446127 22146210 ~ 22235522 (-)
cdadc1 LOC107676859,LOC107560988,LOC107718418,LOC107603039,LOC107692129,LOC107746266 coding upstream 12734 22694830 ~ 22700547 (-)
rcbtb1 rcbtb1,LOC107676891,LOC107746269,LOC107560987,LOC107718354 coding upstream 19235 22701331 ~ 22709814 (-)
ebpl ebpl,LOC107718395,LOC107746301 coding upstream 29631 22711727 ~ 22714547 (-)
kpna3 kpna3,LOC107746270,LOC107560982,LOC103046682,LOC107676880 coding upstream 33429 22715525 ~ 22730884 (-)
spryd7a spryd7,spryd7a,LOC107580268,LOC107676840,LOC107746271,LOC107718900 coding upstream 49943 22732039 ~ 22735187 (-)
G5422 NA non-coding downstream 60432 22619809 ~ 22621217 (-)
G5413 NA non-coding downstream 76962 22603757 ~ 22604687 (-)
G5408 NA non-coding downstream 142129 22539269 ~ 22539520 (-)
G5405 NA non-coding downstream 154784 22526641 ~ 22526865 (-)
G5404 NA non-coding downstream 155227 22526116 ~ 22526422 (-)
LOC122341430 NA non-coding upstream 77532 22759628 ~ 22765115 (-)
G5464 NA non-coding upstream 156860 22838956 ~ 22839592 (-)
G5465 LOC107676845,LOC107746297,LOC107560973,LOC107692180,LOC107718848,LOC107603005 non-coding upstream 159706 22841802 ~ 22842024 (-)
G5466 NA non-coding upstream 168916 22851012 ~ 22851348 (-)
LOC122342025 NA non-coding upstream 291583 22973679 ~ 22978634 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other downstream 79001 22539684 ~ 22602648 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other downstream 352720 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other downstream 394128 22272818 ~ 22287521 (-)
LOC122348907 NA other downstream 881905 21761881 ~ 21799744 (-)
G5108 NA other downstream 908887 21724387 ~ 21772762 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 182735 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 231804 22913900 ~ 22916405 (-)
gja5b cx41.8,LOC107746285,LOC107676875,LOC107566537,LOC107692115,LOC107746055,LOC107676898,LOC107746286,LOC107566538,LOC107692192,LOC107603053,LOC107746072 other upstream 336142 23018238 ~ 23030310 (-)
LOC122351696 LOC107729347,LOC107583214,LOC107566139,LOC107746059,LOC108434669,LOC106951888,LOC108258286,LOC106586852,LOC105012299 other upstream 1088928 23771024 ~ 23916448 (-)
G5624 LOC107675992,LOC107569046,LOC107729366 other upstream 1350767 24032863 ~ 24172062 (-)

Expression


Co-expression Network