LOC122352459 (mtp,LOC107557955,LOC107723195,LOC107564103,LOC107692610,LOC107665974)


Basic Information

Item Value
gene id LOC122352459
gene name mtp,LOC107557955,LOC107723195,LOC107564103,LOC107692610,LOC107665974
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7706885 ~ 7717325 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249867.1
gagagagagagagagagagctgaaggATCAGGCAGCACATCCTTTCTCTGGCCCGCAGACCTTTAACGCACACAGCACACAGCGAGCCAACCATGCTGCGGCTTGCTGGACTTTTACTATGTGTCACCTCCTTTTTAAGTACCTCATCCCTTGgtGCAAGTGCTGGGCCCCGGCTGGATAATGACAAACTCTACAGATATAGCTACGTTGCCGAGGTGGGGCTGAACAGGCCGACGGGATCCACTAGAGGGAACGCTGGATTCAGGATTAGCAGCGATGTGGACATCAGCCTCGTCTGGAGgaacccagacatccaggacgAACAACTACTGCGATTGCAGATTTCAAATGTTCAAGTTGAAAGTGCTGGAAAGCGCTCCCAGAAAAACAACATCTTCCATGGCAGCTCAGCAGAAAGCATTCTGGGTAAAGTCAGGCTTGAGGCACTTCAGCGACCCTTCGTGGTGCTGTGGAAGATGGGAAAGATCAGAAGCCTGTATGCCCATAAGGCGGAGCCTGCTACCATCAAAAACTTGAAGAGGGGTGTGGCCAGTATGCTAATGATGCAGTTAAAGTCTGGGAAGATGTCAGAGGCCGATGCTTCAGGGAAATGTTTAGTTGAGTACAAAGCTACGAAAGATCAAGTTATTCGTATAAAACAATTGGATACTTGCAAAACACAAGAGATGGGATTCACTACACACAGCCCAGTATTGGGCGTCAGTGGGAAGTCTGCTTCTGAAACCATAATCACTCTGGAGAAAGGCATCATTAAGTCTGCTGATGTAGAGGAAACACACATTTTGTCCATCAATGCTCGTCATAAAGCTGCTACTAAAGTCCTGTCCAGGCAGTCGCTGACGCTTAAAAAGATCGAGGTTGGTCCAGCAGAAGTAGCGGGGAAAGATGCTGCAAGTGTGGTGAAGTCTCTGGATGACAAGCTCATGTCGGTTGGAGTCATGGTGGAGAAGGTTAAAACCAAATGCAAGGGATGCCCCAATCTAATGGACACATGGAAAGTGGTGAGATCCCAGCTGGAGCCAGAATCCCTCTCTAAAGCAGAAGCCCCGAGGAGCTTCCTCATGCTCTTACACAGCCTGCGCAAAGCCAGCAAGTCAGAGATCCTGACGGTACTGCGCAACTGCAGCAAGACTCTACTGCCTCAGCTGGTGGATGCAGTAACATCAGCTCAGACTCCTTCTTCTCTCTCAGCCATTCTGGAGTTCCTGGACTTCAGCAAGAAAGAAGGTTTAGTGCTGCAGGAGCGCTTTCTGTACGCATGTGGCTTTGCCTCTCACCCCACAGAGACCATGATGCAGTCCCTGCTGGATTTGTCTCAAGGAAAGATCGGTAGTACAGAAATCAAAGAGTCAGTTGTGATCATCATGGGAGCTTTGCTCAGGAAACTCTGTCTGAAAGGAGCATGTGAACTAACAACGGTGCTTAAGGTGAAAGAGGTGCTGTTAGCAGGGCCTGACAGCACTCAGGTGGAGTCTGAAGTTCAGATGTACCTGCTAGCACTGAAGAACGCTCTTCTGCCGGAGGGTGTTCCTGTTCTTGCCAAATACGCAGAGTCTGAGGTGGGAGCATTTAGCACCATCGCCATTACAGCGCTGCAGAGATACGACCCTCAGCTGATCACATCAGAGGTGAAAAAGACACTGAACCGCATATACCATCAGAACAAGCGTATTTATGAGAAGAACGTTCGTGCCGCGGCAGCTGATGTGATTATGAGCAGTAATCCATCCTATATGGAGGTGAAGAATCTTCTACTCTCCATTGGACACCTGCCACACGAGATGAACAAATACATGCTGTCTAAAGTCCAGGACATATTGCGCTTTGAGATGCCAGCCTGTAAATTGGTACAACAAGTGATGAAGGACATGGTTTCTCACAACTATGACAGATTCTCAAAGACTGGGTCATCCTCTGCTTTTTCAGGCTTCATGGCACgaaCCGCTGATGTCACTTGCACCTACAATTTGGACATCCTGTACTCTGGCTCTGGCGTATTGAGGAGAAGCAACATGAACATTTATGGTCAGAGCACAGATGCCCTCCTTCACGGCCTTCAGGTGACAATTGAAGCACAGGGTCTAGAGTCTCTAATTGCAGCCACACCAgatgaaggagaagaagaactggagtCTTTTGCTGGAATGTCTGCTCTGCTGTTCGATGTACAACTCCGGCCAGTGACCTTCTTCAAGGGCTACAGTGACCTAATGTCCAAGATGTTCTCCATGTCTGGAGATCCAATCAATGTGGTGAAGGGCCTTATTCTGCTGACAGACCACTCACAGGTGATTCCTCTACAGTCTGGTCTAAGAGCCAATGCTGAGTTTCAAGGTGGTTTGGCCATCGATATCTCTGGAGGGATGGAGTTCAGCTTGTGGTACAGAGAGTCTAAGACGAGCGTCAACAACAgGGGAGCGTTGGTCGTCTTGGGTAACGTGACAGTGGATACAGACTTCGTAAGCGCTGGAGTGGAAGTAGGTTTCGAGACAGAGGCCACCCTGGACTTCATCACCACCGTGCAGTTCTCCGAGTACCCCTTCCTCGTCTGCATGCAGATGGACAAAACCACTTTCCCCTTCAGAGAGAGCGTGTCCAAGCAGGAGAAACTGCCTTCAGGACAGACATTCTCCTCAAAGAGGAGCAGAGATCAGCTGGTGCCGGGTTCAGAGTTTCCCCTACACCAGGAGAACTCTAACATGTGCAAGAAAGTCTTTGAACAGGCCTGGTAGTCAAGCTGGATGCTTTGGCTAGCAAACGCAAAAGGTTTTCATGCAAACAatcagtttacattttgtgtCTGTTTATGCTGAAACCTTGAATCAGTCAGGCATGCGAAGGGTTGTggactcttaaaaaaaaaaaaaaaaaaaaaaaaaggctccaCCCTCAGCCATTTtgggttccccaaagaacctttcagtaaatcgttttttaaaataaccctTTTTCTCTTATTGTGACATATTAATGATCTAAAgaatctttttcatttcaaagtgGAATAAAAAGGTTGTATGAATGTTAAAGATTTTTGATGGAACCATGAATGCCAATaaggaacctttatttttaagagtgcactATATAGTTCTTATGTGTCAAGCcctgtttttttgccatttatgaATGattgacacaaaataaatttgtatttttgtccatttttataaataataggAACGTACAAAATAACCAATGGCACTCTCGTCATGTGACAGAATTATTCAACCCATAAAACAAaggtgaaatatttataaacgaTAACATTATAGCATTATAACAGGACTGTGTATTTGAGGTGCtactgtgttatttatttaatcagaggGCTTTCTGACACACTTCATCCCTCCACAGGCAGTTCATGCTGTCTGGTTTCCATGATTACACCAGATGTTTACATTCTTGCGAATATTTATGGCAGTCTTGTACATGGGAAGATAATCAACCatgaataaagtttttgtcttttttggaattctt

Function

symbol description
mtp Enables phosphatidylcholine transporter activity. Involved in lipoprotein metabolic process; lumen formation, open tracheal system; and neuron development. Located in endomembrane system. Is expressed in adult head; adult heart; and embryonic/larval fat body. Human ortholog(s) of this gene implicated in several diseases, including abdominal obesity-metabolic syndrome 1; abetalipoproteinemia; familial hypercholesterolemia; hyperinsulinism; and obesity. Orthologous to human MTTP (microsomal triglyceride transfer protein).

NR:

description
PREDICTED: microsomal triglyceride transfer protein large subunit-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0007586 digestion biological_process
GO:0015909 long-chain fatty acid transport biological_process
GO:0001579 medium-chain fatty acid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K14463 MTTP, MTP; microsomal triglyceride transfer protein large subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249867.1 True 3507 mRNA 0.46 18 7706885 7717325

Neighbor

gene id symbol gene type direction distance location
pla2g12a LOC107692613,LOC107564125,LOC107665940,LOC107758864,LOC107557937 coding downstream 20030 7684099 ~ 7686855 (-)
grk4 grk4,LOC107665967,LOC107723186,LOC107692618,LOC107758889 coding downstream 58291 7624106 ~ 7648594 (-)
iqce iqce,LOC107723199,LOC107692619,LOC107665963,LOC107758887 coding downstream 90585 7607639 ~ 7616300 (-)
ttyh3b ttyh3b,LOC107692620,LOC107557961,LOC107564174,LOC107723181,LOC107758886,LOC107665965 coding downstream 99818 7578940 ~ 7607067 (-)
zmp:0000001069 LOC107723174,LOC107565406,LOC107692713,LOC107758860,LOC107557941,LOC107758862,LOC107665948 coding downstream 129416 7573728 ~ 7577469 (-)
b4galt1 LOC107692709,LOC107565367,LOC107758898,LOC107665944,LOC107557953,LOC108277608 coding upstream 4777 7722102 ~ 7729740 (-)
cplx2l cplx2l,LOC107692605,LOC107723185,LOC107665962,LOC107758899,LOC108241424,LOC103366469,LOC107390991 coding upstream 45056 7762381 ~ 7770526 (-)
sclt1 sclt1,LOC107692600,LOC107665924,LOC107683335 coding upstream 88367 7805692 ~ 7818399 (-)
pcdh18a LOC107751534,LOC107692598,LOC107564003,LOC107746447,LOC107557554 coding upstream 455012 8172337 ~ 8179576 (-)
elf2b elf2b,LOC107692595,LOC107702304,LOC107742505,LOC107714223,LOC107562959 coding upstream 755494 8472819 ~ 8490055 (-)
G1781 NA non-coding downstream 46353 7656078 ~ 7660532 (-)
G1663 NA non-coding downstream 390567 7315910 ~ 7316318 (-)
G1660 knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895 non-coding downstream 393987 7312252 ~ 7312898 (-)
LOC122341717 NA non-coding downstream 408740 7297494 ~ 7298145 (-)
G1632 NA non-coding downstream 554405 7150285 ~ 7152480 (-)
G1809 LOC107723197,LOC107692608,LOC107564078 non-coding upstream 26170 7743495 ~ 7797446 (-)
G1845 pcdh10a,LOC107751533,LOC107665923,LOC107557555 non-coding upstream 235888 7953213 ~ 7984303 (-)
LOC122341751 NA non-coding upstream 357850 8075175 ~ 8077387 (-)
G1868 NA non-coding upstream 421158 8138483 ~ 8167387 (-)
LOC122351284 NA non-coding upstream 729223 8446548 ~ 8448624 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 411056 7204004 ~ 7295829 (-)
G1642 NA other downstream 536863 7125642 ~ 7170022 (-)
trpc5a trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 other downstream 572603 7071589 ~ 7134282 (-)
LOC122342514 NA other downstream 1162327 6533501 ~ 6544558 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other downstream 1238631 6456044 ~ 6468254 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other upstream 774819 8492144 ~ 8500212 (-)
G1926 NA other upstream 838715 8556040 ~ 8607795 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other upstream 1061887 8779212 ~ 8798355 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 2639856 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 3017645 10734970 ~ 10799609 (-)

Expression


Co-expression Network