XLOC_006590 (hkdc1)


Basic Information

Item Value
gene id XLOC_006590
gene name hkdc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23017498 ~ 23031803 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012731
ACACCAGAATCACTCCTGAGGAAGCAGGAGGTCAAACAATTTAAGGGGAACACATCTAAATCTGACCGTTCATTTAGTCTGACCTGCATTAGGAAGCCAAGATGTTCGCGGTTCATTTGTTGTCCTTTTACTTCTCAAAGCTGCAGGAGGATCAGATCAAGAAGGTAGACAGATTTCTGTATGCAATGCGCCTATCAGAAGATCAGCTGAAGGACATATCAGCTCGCTTTCGGCTCGAGATGGAGAAGGGACTGTCAAGCGAGAGCAATGCTGCAGCTGCTGTGAAGATGCTCCCGACTCATGTTTATTCAACACCCGATGGCTCAGAGAAGGGGGAATTCCTGGCACTGGATCTGGGGGGCTCAAAATTTAAAGTACTCCAGGTAAAGGTTTCAGAAGATGGGAAGGGAAAAGTGGAGATGGAGAGTGAAACCTTTCCCATCCCTGAAGAGATTGTCAATGGCAGAGGAACAGAGctttttgaGCATGTGGCAGAATCCTTGAAGTCTTTTCTACAGAAGCACCACATTAATCACACAAGAAAACCTCTCGGCTTCACTTTCTCCTTCCCATGTGCACAGTCCAAAATAGACGAGGGTGTCCTGCTGTCATGGTCGAAGAATTTCAAGGTTAGAGGTGTTCAAGGAACCAATGTGGTGCAGTCATTGCGGAAGGCCATTCGTAAAGTTGGgGATCTTGATGTGGATGTCCTGGCGATGGTCAATGACACAGTGGGGGCCATGATGACCTGTGGATACGATGACCAGAACTGTGAAGTGGGGGTTATTGTAGGTACTGGCACCAATGCGTGTTACATGGAGGAAATGCGGCACATTGACCTGGTGGAGGGAGATGAAGGAAGAATGTGTATCAATACTGAATTGGGGGCATTTGGAGATGATGGTGTTCTTGATGATTTCATTACAAGCTTTGACCGTGAAATTGATGCCGCCTCTATTAATCCAGGAAAACAGCTTTTTGAAAAGATGGTGAGTGGGATGTACATGGGAGAACTTGTGAGACTTATCCTTCTAAGAATGGCCAAGAAGGGTCTACTCTTTCGTGGCCAAATCTCGGATGCTCTTCGAACCAAGGGAACATTTCATACCAACCATATGTGCTTGATTGAACAGTATAAAAGCGGTTTGGAAAACACCAAGGAGATCCTGGAGGACCTAGGACTAAATCCCAGTGACGATGACTGTATTGCAGTCCAGCATGTCTGCACCATCGTGTCCTTCAGGTCAGCTAATCTGGTGGCTGCAGCTTTGGCTGCCATCCTAACACGGATCAGAGAAAACAAAAAGCTGAAGACCCTTCGGACTACTGTAGGAGTGGATGGGACGGTCTACAGAACACATCCACAGTACCCCAAAAGGCTCCACAAGGTGGTCCGCCATCTGGTGCCAGACTGCCATGTGCGTTTTGTGCTGTCTGAAAGTGGCAGTGCCAAAGGTGCCGCTATGGTGACCGCCGTGGCTCAGCGATTAGCCTCCCAGCGGAAAGAGATTGATGATACCCTTGCAGCTTTTGCTTTGACTTCCACACAGCTCCAGGAAGTGAAGCAGAAGATGCATGTTGAGTTGGAACGAGGCCTGAAAAAAGAAACCCATCCCACTGCTTCAGTAAAAATGCTGCCCACATATGTTTACAGGACACCAGATGGGACAGAAAGGGGAAAGTACCTTGCTTTGGATCTTGGTGGAACCAATTTCCGCGTGTTGGTGGTTAAGATTCGGACTGGCATGCGAAATTCAGTCCGGATGTACAACAAAATTTATGCCATCCCACTGGAGATTATGCAGGGCACAGGAGAGGAGCTGTTTGACCACATCGTTCAGTGTATCTCAGATTTCTTGGACTATATGGGAATGAAGAACACTCGTCTGCCACTTGGCTTCACCTTCTCTTTCCCGTGCAATCAGACAGGTATTGATAAGGGAGATCTGGTCTGCTGGACAAAGGGCTTCAAAGCGACAGACTGTGAAGGGTATGATGTTGTGGACATGCTGAGAGAGGCCATCAAAAGACGAAATGAGTTTGATCTCGATATCGTAGCTATAGTTAATGACACAGTTGGCACAATGATGACCTGTGCATATGAGGACCCTAAATGTCAGATTGGTCTTATTGCTGGAACAGGAAGCAATGTGTGTTACATGGAGGAGATGAAGAACATTGAGATTGTTGAGGGTGATGAAGGACAGATGTGTGTAAACACTGAGTGGGGAGGTTTTGGAGAAAATGATAATATTGAGGACATCCGGACCAGATATGACAGAGAGGTCGACAGCGGCTCACTCAATGCTGGGAAACAAAGGTTTGAAAAAATGACCAGTGGCATGTATTTAGGAGAGATTGTAAGGCAGATCCTTATTGATCTCACAAAGCGTGGTTTTCTGTTTCGCGGTCGCATCACAGAGAGACTGAAGACCAAGGGAATCTTTGAAACCAAGTTTCTTTCACAGATTGAGAGTGACCGTTTGGCACTACTGCAAGTGAGGTGCATATTGCAGAGTCTGGGTCTGGACAGCACATGCGATGACAGTATTATTGTGAAGGAGGTTTGTGGAGCTGTTTCTCGTCGAGCAGCTCAGCTCTGTGGAGCAGGAATGGCTGCAATTGTGGATAAAATCAGAGAGAACCGTGGATTGGATCGTCTGGATATCACTGTTGGAGTGGATGGCACTCTTTACAAGTTACATCCACActtctccacgatctTAAAGGAGACTGTCAGAGAGCTGGCGCCCAATTGTAAAGTGGATTTCATCCTTTCAGAGGACGGCAGTGGCAAAGGAGCGGCGCTGATCACAGCTGTGGCTCGACAGCATCACGTACAGAAACAAGAACAGAACTAGACGGACTCCTCTGAAGAGTgcttttgtttatttgaaaagaatagttcacccaaaaaacaaacatttgctgttaatttactcaaatTCAGGCCCTCTAACAAGAACATTTCCAGTTGAAGCGGTGGTTCTTGGTGGTTAATAAGACTTTTTGTGCGTTCCAAGTGGGGTTTTGAAATCATGGGTGCCATACTGAAGTGTCGTTCCAAACCAACATGTTCAAAACCGGCTACTTCGAAGGGCCCTTGGAGTAAAGGATTTTCGACAAATACAACTGATTGACACTGCAGGCCACCATCCTTTGAATAGGGAAGTTGTTTGGTGTCACAGTGCACTCAGTTTGGAAGGACTGATCCCTTCAGACAGCCCCTTCTAAGGAATTAGGGCATGGGGATGAACTCTTCTGAATGGATCCTagtttt

Function

symbol description
hkdc1 Predicted to enable fructokinase activity; glucokinase activity; and mannokinase activity. Predicted to be involved in cellular glucose homeostasis; glucose 6-phosphate metabolic process; and glycolytic process. Predicted to act upstream of or within carbohydrate metabolic process and phosphorylation. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including digestive system; endoderm; heart; pronephric duct; and yolk syncytial layer. Orthologous to human HKDC1 (hexokinase domain containing 1).

GO:

id name namespace
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0005536 glucose binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0004396 hexokinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9801 Predicted to enable fructokinase activity; glucokinase activity; and mannokinase activity. Predicted to be involved in cellular glucose homeostasis; glucose 6-phosphate metabolic process; and glycolytic process. Predicted to act upstream of or within carbohydrate metabolic process and phosphorylation. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including digestive system; endoderm; heart; pronephric duct; and yolk syncytial layer. Orthologous to human HKDC1 (hexokinase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000038703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012731 True 3280 mRNA 0.47 18 23017498 23031803

Neighbor

gene id symbol gene type direction distance location
XLOC_006589 hk1 coding downstream 9685 22972888 ~ 23007813 (-)
XLOC_006588 tspan15 coding downstream 55888 22924024 ~ 22961610 (-)
XLOC_006587 rufy2 coding downstream 110238 22876467 ~ 22907260 (-)
XLOC_006586 pbld2 coding downstream 155365 22849796 ~ 22862133 (-)
XLOC_006585 BX530068.1 coding downstream 170014 22843830 ~ 22847484 (-)
XLOC_006591 supv3l1 coding upstream 5782 23037585 ~ 23051766 (-)
XLOC_006592 vps26a coding upstream 26465 23058268 ~ 23067381 (-)
XLOC_006593 srgn coding upstream 38778 23070581 ~ 23074454 (-)
XLOC_006594 kifbp coding upstream 52055 23083858 ~ 23095006 (-)
XLOC_006595 NA coding upstream 180956 23212759 ~ 23217818 (-)
XLOC_006471 BX537274.2 misc downstream 12752593 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22191273 825904 ~ 826225 (-)
XLOC_006582 CR550304.1 non-coding downstream 233065 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 822330 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 1077533 21925701 ~ 21939965 (-)
XLOC_006570 NA non-coding downstream 1870116 21146114 ~ 21147382 (-)
XLOC_006597 NA non-coding upstream 376226 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 929489 23961292 ~ 23961406 (-)
XLOC_006605 CR762497.2 non-coding upstream 1095260 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 1251867 24283670 ~ 24286390 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_13404454_13437477 HKDC1 coding CI01000012 null 13404454 ~ 13437722 (+)