CI01000012_13404454_13437477 (HKDC1)


Basic Information

Item Value
gene id CI01000012_13404454_13437477
gene name HKDC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13404454 ~ 13437722 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13404454_13437477.mRNA
GAACAATAGGATGAGATTTTACCACTTAATAACTTTGGCACTGGCGATAATATGCCTTTTTGGGCACAGTGGACTAGGAGCCCCAACCAAAGGCAGGTTTATGTGGGTGAAATGCAAGCCGGATGAAAAGAACGCAAACTGTGTCACAAAGAAGGGCCCCTGGGTGCCCCTGTCAGGGCAAAGCACTCGCCTTCTACCTTCTGCTGCAAAACACATAGTCCCAGTTAGCACAGAGGAAGCCACTCCTGAGACCGAGGAGCAGTCAGGAGAGGGTTCAGGTAACTCAGACACCTTCGCCCCTTTTCTCAACATGAATCAGCAGTTGATGGGAGATGAGCCAGAGCAGGAAGTCAACAAGAATGAAGAGGAAGCATCGACTTGGATGGAGTCCAGTGGAGACGCAGATTACTCAGATTATGCCTCATCTGAGAAAATAGAATGGCTTTCTAAACAGGATTTGAAAGAGGACAACATTATTGCTCCGTTTAGCTCAGAGGAACAGGGAACCAACGGAAGTTGTGCTGAGGAGGATTGTGTTCAAGCTAAGGCTACGGAGCTGAAATGTACACACTTGCCTTATTCCCTCTGGATTAAAAGCCCCCAATCCTGGCAAACACGTTTGCAGTTTATCCAGCCTAAAGTAGGCCATGGAAGTCAAACTTACATCAACGCAAATCCTGCAGGACCTTTAAAAACAGATGTAAAGCTGAAGGTTGAATTCAAACTAGATACCGAGTTCATTTTGGTTTTCACTCAAATTAAGCTGTTTAGTTTCCTTGGAGGTCTTTTTGGTACTGTGTGTGAAATCGATGTCATTCTGAGCGATGCTGAAAGCAGAAAAACAGCAGAGCTGAAGACTGAGGATGGGAAATTGGAGAAGCATTATCTGTTTTATGATGGCGAGTCAGTTTCAGGAAAGGTAAATATCAATGTGAAACAAACAGGGAAAAGGCTTGAACATCAGGGAATTCGCATTGAGTTTGTTGGACAAATTGAGCTCTTCAGTGATAAAAGCAATACTCATGAGTTTGTCAACCTTGTGAAGGAGCTTGCTCTGCCTGGGGAGTTGACACAGAACCGCAGCTATGACTTTGAGTTCATGCAGGTGGAAAAGCCATACGAGTCCTATGTTGGAGCGAATGTGCGACTGAGGTATTTCCTTAAAGTTACAATTGTGAGGAGGCTGTCTGATTTGGTAAAGGAGTATGACCTCATTGTTCATCAGCTGGCCACCTACCCTGATGTCAACAACTCTATTAAAATGGAAGTGGGCATTGAAGACTGCCTGCATATAGAGTTTGAATACAATAAGTCCAAGTATCACCTCAAAGACGTAATTGTGGGTAAAATCTACTTCTTGCTTGTACGAATTAAAATCCAACACATGGAGCTTCAGTTGATCAAGAAAGAAATGACGGGAATTGGGCCGAGCACAACTACTGAGACAGAGACTGTGGCCAAATATGAGATTATGGATGGAGCACCAGTCAAGGGTGAATCCATTCCCATTCGCCTTTTCCTAGCTGGTTATGACCTTACACCCACAATGAGAGATGTAAACAAGAAGTTCTCTGTGAGGTACTTTTTGAACTTGGTGCTTGTGGATGAAGAAGATAGGAGATACTTCAAACAGCAGGAAATAGTTTTGTGGAGGAAGGCACCAGAGAAACTGCGGAAACGGAACTTCCATCAGCGCTATGAGTCACCTGAGCCCCGGCCGAGTCTCTCTGCTGAGCAGCCGGAAATCTGTGTCGGGACGGATTTGGCGGGAAATTGCTTACATATTCGTTCGACTGTGCGTGTTAGGCTAAAAATGTCAGTAAATCGCTGTATTTACTTGTTGTCGCGTTGCCACATTCGATACCGGGTATGTGCTAGCACAAGCTTCTCCACTGCTACAGTAGCAAACAACACTTCACTGCATCCAACAAAAAGAACGTCGGAAGAATTATCCAGGAGACATTCATCTTCAGACAGTTCATCGAGACCCCTGGACACATCACTGTTTGTACCGCTCACTGTCAAAAGTGATGAAGCCTGGGATGGGGCAATCGGCGCCGAGCTGACGCAACCGCTGGACAAAAGTGAAATTCTCAAAGTACTGAATAGATTCTACAAAAGGAAAGAGATGCAAAAACTGGCTGCTGACCAAGGACTTGATGCCCGTCTCTTTCATCAAGCATTTGTCAGTTTTAGGAAATATGTGCTGGAAATGAACTCAATAAATGCTGATTTGCACATCATTCTTAATGACATCTGCTGCGGAGCTGGGCACATAGATGACATTTTCCCTTACTTTATGAGACATGCCAAACAGATTTTTCCCATGTTGGACTGTATGGATGATTTACGCAAGATCAGTGACTTACGGGTCCCAGCAAACTGGTATCCAGAGGCCAGAGCTATTCAAAGAAAGATTGTTTTTCACGCAGGACCCACCAACAGTGGTAAGACCTATCATGCCATCCAGAGATACCTTGCAGCCAAGTCTGGAGTTTACTGTGGACCTCTAAAGCTACTGGCCCATGAAATCTATGAGAAGAGTAATGATGCAGGAGTGCCATGTGATCTGGTGACAGGAGAAGAGAGAATATTTGTTGATCCAGAAGGAAGACCGTCTGGCCACATTGCCTCTACAATAGAGATGTGCAGTGTCACAACTCCATATGAAGTGGCTGTCATTGATGAGATTCAGATGATAAAAGATCCTTCCAGAGGGTGGGCTTGGACCAGAGCTCTTCTTGGTTTGTGTGCTGAGGAGATCCATGTGTGTGGAGAAGCTGCAGCAGTTGAATTTGTCACTGAACTCATGTTCACCACTGGTGAAGAGGTTGAGGTACATAATTATAAGAGGCTGACCCCCTTTTCAATCTCAAATCATGCAGTGGAATCATTAGATAACCTGAAGCCTGGCGACTGCATTGTGTGCTTCAGCAAAAATGACATCTACTCAATCAGCCGACAGATAGAAATCCGTGGCCTGGAGTGTGCCGTCATTTATGGCAGCTTGCCCCCTGGCACCAAGTTGGCTCAAGCAAAAAAGTTTAATGATCCAGACGACCCTTGCAAAATCCTTGTTGCCACGGATGCAATTGGAATGGGTTTGAACTTGAGTATTAGGAGAATCATCTTTAACTCTCTGGTAAAACCCAGTGTGAATGAGAAGGGGGAGAAGGAGCTGGACACTATTTCCACGTCACAGGCACTGCAGATCGCTGGTCGAGCAGGACGCTTCAGCTCTGTGTTTAAAGAGGGTGAGGTCACGACTATGCTAAGAGACGACTTGACTGTTTTAAAGGAGATTTTGGGGAAGCCTGTTGACCCAATTTCGATGGCAGGATTACACCCCACAGCGGAACAGATAGAGATGTTTGCCTACCATCTTCCCCATGCGACTCTCTCAAACCTCATTGATATATTTGTGAGTCTCGCACAAGTGGATGGACTTTACTTTGTCTGCAACATTGATGACTTCAAATTCTTGGCGGATATGATTCAGCATATCCCGCTGAATCTGCGTTCCCGCTATGTGTTCTGCACAGCCCCCATCAACAAGAAGCAGCCCTTCGTTTGTACATCATTTCTCAAGTTTGCCAGACAGTTCAGCAGAGACGAACCTCTGACATTTGACTGGGTGTGTCGACATATGAATTGGCCCGTGGCCCCTCCCAAAAACATCAAGGACTTGGTTCACCTGGAGGCTGTTCATGATGTGCTGGATCTTTACCTTTGGCTCAGCTATCGCTTCATGGACATGTTCCCAGATGCTAACCTCATCCGTGAGATTCAAAAGGAACTGGACGGAACCATCCAAGTTGGCGTGCGTAACATCACGCGGCTTATCCGTGCCACAGAGAATCAATCTGCCGCTGCAGAAACCTCCGTAAGACTTTCTGATTCAGGCACGCTGCCGCTGAGGAGGGGACGAGCGCTAAAGGCCCATAATCAAAGAAAAGAGCTCAGGCCGACGGATTCTTCACTGAGCTCAAGGTTGTTGCGGGATGGACTACTGACAAAAGAGCTGTTAGAGCAACTTCAGAGAGAATGGGTCCAAAAGCAGAGCCAAAATGGAGATGACTCCGTTTCAACAAATAAAGGGAAAAGAAAAAAAAATCACCACCTGCTTCAGGAAGTCAAGATGTTTGCAGTCCATTTGCTGTCCTTTTACTTCTCGAAGCTCCAGGAGGATCAGATCAAGAAGGTAGACCGATATCTGTATGCCATGCGCCTGTCAGATGATCAGCTGGCGGACATATCATCTCGGTTTCGGCTGGAGATGGAGAAAGGACTGTCAAATGAGAGCAACGCTGCAGCTGCAGTGAAGATGCTCCCAACACACGTTTATTCAACACCCGATGGCTCAGAGAAGGGTGAGTTTCTGGCACTGGATCTGGGAGGTTCAAAATTTAAAGTATTACAGGTGAAGGTTTCAGAAGATGGAAAAAGGAAAGTCCAGATGGAAAGTGAAACTTATCCCATCCCTGAAGAGATCCTTAATGGCAGAGGAACAGAGCTTTTTGAGCATGTGGCAGAATCTTTGAAGTCTTTTCTACAGAAACGCCACATTAATCACAAAAGAAAACCTCTTGGCTTCACCTTCTCTTTCCCATGTACGCAATCCAAAATAGATGAGGGTGTCTTACTCTCATGGTCAAAGAATTTCAAGGATCTTGACGTGGATGTCCTGGCTATGGTCAATGACACGGTGGGGGCCATGATGACATGTGGATATGATGACCAGAACTGTGAGGTGGGGGTTATTATAGGTACTGGCACTAATGCATGTTACATGGAGGAAATGCGACACATTGATCTCGTGGAAGGAGATGAAGGCAGGATGTGTATTAATACTGAATGGGGGGCATTCGGAGATGATGGTGTGCTTGATGATTTCATCACAAGTTTTGACCGTGAAATTGATGCCGCCTCAATTAATCCAGGAAAACAGCTTTTTGAAAAGATGGTGAGTGGGATGTACATGGGAGAGCTTGTGAGACTCATCCTGCTGAAGATGGCCAAAAAGGGTCTACTGTTTCGTGGCCAAGTCAGTGATGCTCTCAGGACCAAGGGAACATTCCAGACCAAACATATCTGCTTGATTGAACAGTATAAAGGTGGTTTGGAGAACACAAAGGAGATTCTGGAAGACCTGGGACTTAATCCCAGTGAAGATGACTGCATCGCTGTCCAGCATGTCTGCACCATTGTGTCCTTCAGGTCAGCTAATCTGGTTGCTGCAGTTTTGGCTGCCATCTTGACAAGGATCAGAGAAAACAAGAAGCTGAAGACCCTTCGGACCACTGTAGGAGTGGATGGGACGGTCTACCGAACACATCCACAGTACCCCAAGAGGCTTCACAAGGTGGTCCGCCATCTGGTGCCCGACTGTCATGTCCGTTTTGTGCTGTCTGAAAGCGGCAGTGCAAAAGGTGCCGCCATGGTGACTGCAGTGGCTCAGCGGTTAGCTTCACAACGTAAGGAGATTGATGATACCCTTGCGACCTTCGCCTTGAACTCCACACAGCTCCAGGAAGTGAAGGAGAAGATGCGTGTGGAGATGGAACGAGGCTTGAAGAAAGACTCCCATCCCACTGCATCAGTCAAAATGCTGCCCACATATGTTTACAGGACTCCAGATGGGACAGAAAGAGGAAAGTACCTTGCCTTGGATCTTGGTGGAACCAATTTCCGTGTGTTGGTGGTTAAGATTCGTACTGGTATGCGGAATTCAGTCCGGATGTACAACAAGATTTATGCCATCCCACTGGAGATCATGCAGGGCACAGGAGAGGAGTTGTTTGACCACATAGTTCAGTGTATCTCGGATTTCTTGGACTATATGGGGATGAAGAACACTCGTTTGCCTCTTGGCTTCACCTTCTCTTTCCCATGCAGCCAGACAGGTATTGATAAGGGAGATCTGGTCTGCTGGACGAAAGGCTTCAAAGCGACAGATTGTGAGGGCTATGATGTTGTGGATATGCTGAGAGAGGCCATCAAAAGACGAAATGAATTTGACCTTGATATCGTTGCTATAGTGAATGACACAGTTGGCACAATGATGACGTGTGCATATGAGGACCCTAAATGTCAGATTGGTCTTATTGCTGGAACGGGCAGCAATGTGTGTTACATGGAGGAGATGAAGAACATCGAGTTTGTGGAGGGTGATGAAGGGCAGATGTGTATAAACACTGAGTGGGGAGGATTTGGAGAAAATGATAATATTGAGGACATCCGGACCAGATATGATCGAGAGGTGGATGAAGGCTCACTTAATGCAGGAAAACAAAGGTTTGAAAAGATGACCAGTGGAATGTATTTGGGAGAGATTGTAAGGCAGATTCTCATTGATCTCACAAAACGCGGTCTTCTGTTTCGTGGTCGCATCACAGAGAGACTGAAGACCAAAGGCATCTTTGAGACCAAGTTCCTTTCACAGATTGAGAGTGACCGTTTGGCACTATTGCAAGTGAGGTGCATTCTGCAGAGTCTAGGCTTGGACAGCACATGTGATGACAGTATTATTGTGAAGGAAGTGTGTGGAGCCGTTTCCCGCCGAGCAGCTCAGCTCTGTGGTGCAGGAATGGCTGCTATTGTAGACAAAATCCGAGAGAACCGTGGACTAGAGAATTTGGAGATTACTGTGGGTGTGGACGGCACCCTTTACAAGTTACATCCACACTTCTCCACGATCTTAAAGGACACTGTCAGAGAGCTCGCTCCCAATTGTAAGGTGGATTTCATCCTATCAGAGGATGGCAGTGGGAAAGGGGCGGCCCTGATCACAGCTGTAGCACGACAGCATCAAAGAGAGAAACAAGAACCTCGCTAGACGCTCAGACTGAGTTTCTCTGAGGGCTACTTTTGGCGTTTTAAGAGTACAGGGTTTCTATGAGTAATTATATAGATTTATCAAATGATGGCTCTCATGAAATTTCACTTGTTTGCAGCTTGCATATAAAATTATATTTGCATTATTTTTTTTTGCATATAAAATAAGTGCATTCAGGGACATTGACAGAGATGTTCATTTATTACTTTTTTATTATTATTGTTTTTAATGTATTAATTAGTGCA

Function

symbol description
hkdc1 Predicted to enable fructokinase activity; glucokinase activity; and mannokinase activity. Predicted to be involved in cellular glucose homeostasis; glucose 6-phosphate metabolic process; and glycolytic process. Predicted to act upstream of or within carbohydrate metabolic process and phosphorylation. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including digestive system; endoderm; heart; pronephric duct; and yolk syncytial layer. Orthologous to human HKDC1 (hexokinase domain containing 1).

GO:

id name namespace
GO:0043798 glycerate 2-kinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13404454_13437477.mRNA True 7080 mRNA 0.46 48 13404454 13437722

Neighbor

gene id symbol gene type direction distance location
CI01000012_13391082_13401374 KIF1BP coding upstream 2762 13391082 ~ 13401692 (+)
CI01000012_13291350_13311094 NA coding upstream 92298 13291350 ~ 13312156 (+)
CI01000012_13102619_13168566 PRIM2 coding upstream 235888 13102619 ~ 13168566 (+)
CI01000012_13063943_13081607 NA coding upstream 321887 13062843 ~ 13082567 (+)
CI01000012_13029637_13033226 RGS17 coding upstream 370729 13029435 ~ 13038899 (+)
CI01000012_13442338_13442897 NA coding downstream 3131 13440853 ~ 13443219 (+)
CI01000012_13445338_13452629 HK2, HKI, HK1, HK1.L coding downstream 7133 13444855 ~ 13452629 (+)
CI01000012_13471010_13484053 TSPAN15 coding downstream 33288 13471010 ~ 13486220 (+)
CI01000012_13498541_13510228 RUFY2 coding downstream 60819 13498541 ~ 13510265 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding downstream 84362 13522084 ~ 13525319 (+)
G76569 NA non-coding upstream 15301 13388853 ~ 13389153 (+)
G76567 NA non-coding upstream 17076 13387048 ~ 13387378 (+)
G76566 NA non-coding upstream 17810 13386436 ~ 13386644 (+)
G76565 NA non-coding upstream 31910 13372080 ~ 13372544 (+)
G76519 NA non-coding upstream 187295 13216935 ~ 13217159 (+)
G76600 NA non-coding downstream 83270 13520992 ~ 13521318 (+)
CI01000012_13527966_13529695 PBLDP, PBLD non-coding downstream 89505 13527184 ~ 13529762 (+)
G76594 NA non-coding downstream 100799 13538521 ~ 13539179 (+)
G76374 NA other upstream 655285 12745531 ~ 12749169 (+)
G76385 NA other upstream 728788 12630755 ~ 12675666 (+)
G75533 NA other upstream 2258715 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3180167 10223697 ~ 10236276 (+)
G76645 NA other downstream 214137 13651859 ~ 13652234 (+)
G76656 NA other downstream 265765 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006590 hkdc1 coding NC_007124.7 CM002897.2 23017498 ~ 23031803 (-)
bowfin (Amia calva) AMCG00003088 hkdc1,LOC103047009,LOC106612435,LOC107743550 coding CM030139.1 CM030139.1 11003963 ~ 11015125 (+)