G76600


Basic Information

Item Value
gene id G76600
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13520992 ~ 13521318 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87388
TGTGAGCAGAGAGGCTCCAAGCGCATGTGGCACAAGCTGCACGGAGGATTGAGGAATCATCGAATGTAGTCACTAGGCTTATACTTTATCCTGTATAAAACTGCAATGTGGCACATTCGAACGCTCCAGACTCATAATAGGGCCATGTGTACTACCGCGAGAGAATCTGCAGCTCTATACAAACAAATAGCCTACAGCTGTGGGAAGAAAAGAGAGCCAGTGAAGCTAAATAGAACTATCCAATGACATTTTCCCCTTAAATGTAAGTTATAAATGTCTATTAACACATTAATGCAAAGAAAATAAATTAAATGTAAATCACGCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU87388 True 327 lncRNA 0.40 1 13520992 13521318

Neighbor

gene id symbol gene type direction distance location
CI01000012_13498541_13510228 RUFY2 coding upstream 10727 13498541 ~ 13510265 (+)
CI01000012_13471010_13484053 TSPAN15 coding upstream 34980 13471010 ~ 13486220 (+)
CI01000012_13445338_13452629 HK2, HKI, HK1, HK1.L coding upstream 68363 13444855 ~ 13452629 (+)
CI01000012_13442338_13442897 NA coding upstream 77773 13440853 ~ 13443219 (+)
CI01000012_13404454_13437477 HKDC1 coding upstream 83270 13404454 ~ 13437722 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding downstream 766 13522084 ~ 13525319 (+)
CI01000012_13527966_13529695 PBLDP, PBLD coding downstream 5866 13527184 ~ 13529762 (+)
CI01000012_13533459_13538332 PBLD2, PBLD coding downstream 12072 13533390 ~ 13538443 (+)
CI01000012_13551086_13554035 NA coding downstream 29455 13550773 ~ 13554312 (+)
CI01000012_13559514_13590448 PSD coding downstream 38196 13559514 ~ 13590493 (+)
G76569 NA non-coding upstream 131839 13388853 ~ 13389153 (+)
G76567 NA non-coding upstream 133614 13387048 ~ 13387378 (+)
G76566 NA non-coding upstream 134348 13386436 ~ 13386644 (+)
G76594 NA non-coding downstream 17203 13538521 ~ 13539179 (+)
G76629 NA non-coding downstream 34675 13555993 ~ 13556230 (+)
G76630 NA non-coding downstream 36107 13557425 ~ 13557687 (+)
G76584 NA non-coding downstream 70181 13591499 ~ 13593268 (+)
CI01000012_13029637_13033226 RGS17 other upstream 482093 13029435 ~ 13038899 (+)
G76374 NA other upstream 771823 12745531 ~ 12749169 (+)
G76385 NA other upstream 845326 12630755 ~ 12675666 (+)
G75533 NA other upstream 2375253 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3296705 10223697 ~ 10236276 (+)
G76645 NA other downstream 130541 13651859 ~ 13652234 (+)
G76656 NA other downstream 182169 13703487 ~ 13739731 (+)

Expression


Co-expression Network