CI01000012_13442338_13442897


Basic Information

Item Value
gene id CI01000012_13442338_13442897
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13440853 ~ 13443219 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13442338_13442897.mRNA
TTATAAAACTGTATTGCTCTACAATATAACAAAATTTCAGTACACTAATGGACAAATATGTGCTCAAATATGTGCTAAAATAAATGAATGTGGCAAAATCTGTCATTTGCTCTGCTCCTCTGACGTATCTCAGTGAAACTCTGCTCTGATTGGCTCTGCTCAGAAAGAGGATGTTGAGCTCTCACAATCACGTGCTTCTGAGAGGGGGGAGAATGGCCGCGTGCCTTGGAGCACGACCCACAATAAGCTCATCTGGACTGTGTTACAATCACCTCACCCACTTCCATGGATTTTCTAGTTACCTTGAATTCCCACCGTAACAATCCCCTGAGATGCTGTAAAATAAGACCTGTAACTGCAACAGCTCCACAATGGCTAAAATCACATTTAACACTCCTTTCTTAAATCAGCATTTAATGTTAAGCATCAAAGAGTATTGTTACAATTATTACAATTTTTATTTATTATTAAGTTATTTTGACATAGCCTACTACCATTTATGCCTAAAGCATATGAATATGTGAATATTCAAAACAATGTGACACAAAATGACAATTTAGAGCCTCACATAATGACATGGAAATTGTAAGACAAGGAATTAACTTCCTTTGCATTGTGCGATTATGTGTATTTTAACATCAACATGCTATGCACATCCTCTCTTGTTTTCTAATGTAAATATTTAATCATTCCCAGCTATTCACACATTTCAGGGCAGGCATTTCATGTTTGACCCCCTGATGTTTTTTGTTGTTATCCATTTGATTGTCCCTCCTGCCGACTTCCCCCGAAATTACAAATCACGAGTCTCCTTATTTCCTCAAGCTTCACACATCCAGTCTTCATAACAGTTCTGCCACTGAACTGCAGAAGCAGGAAACATGCATGCCTTTGCTGAAATAACTTGGGCTGTAGCATTACTCAGCATTTTTGCTTCTCCACCCAAATCTAATTATTTTGAAGGGCTGTGAGGCCCTGAGTATGTGACGCATTGGGAACGTGCTCTGTGTGCCTCTTAGGTGAATCCCCTTTTTCTCTTTCATTCAAAGTGGCTGAGAATGAGGAAGAAGGAAGACTGAAAAGGACTGAACGGATAGAATGGAAGCGGGAGGTGGAATCTGAGGAACAGAAACAAAAAGAAGAGCCGGAGGAGGGGGCCAGTCGTCAGCTGTGCTCTGCCTCACAAGCCTTCCCATAAAGCTCAGCCAATAGGAGCAGAGTGAGTGGGTGGGGCTTTAGCCGTTCCCCATCCTAGCCTCTGCTGCATCACATGCAAGCTCATTATATGCAGCTTGACTTCCTAGGCCGAGGAGAGTCAGACATTGCCAAAGCGCTGCAAGGGATCACCCCTACGTGCCGGCTTCTCGTTTTACAGTTAACCCACGTTGCTTCTGTGCTCAAATTGCTTTTCCTGCCTCACTGGAAAGGATCGTAAGATTTTTTCTTCTTTCTTCTGTTGCTTTTTCACCAAAGAGGTGAAGCAGAATGATAGCGGCACAGCTTCTGGCCTACTACTTCACTGAGCTGAAGGATGATCAGGTCAAAAAGCTTCTACGTCACTCGTCGTGCGACGGCGAGGATGAGGACGAGGAGAGTGTCGGGTTACAACAGCTGACTGACGGCATGCCTTTACCAGAGTTCTGTCAGTGTTTGAATGCAATTGTGGAGGGAGGGAAAGATGTGTAATCAGAACGTGACTGCGTGTATGCACATGTCTGTGTGTCTCACTTTTGAGGATATGCAGTCTTTATATTTGAACTCTGTTGGTAAAAAAAAAAAAAAAAAAAAACGTGATGTTTTTAAAATACCATTTTAAATATGGTTAGATAGTTTTAACTTAACTGAAGGACTGAGAAATACTCTAAAATGAGGATATGGATATCAGATATTAAAACATAATTAGTTAATATATTCAGTATTAACATTTCCTACAAATATTATATCTGATTACCTATTAATATGATCAGATACTAATATTTATAAAGAAAGAATACATTCCCAATTTTTA
>TU87352
GCCTAAAGCATATGAATATGTGAATATTCAAAACAATGTGACACAAAATGACAATTTAGAGCCTCACATAATGACATGGAAATTGTAAGACAAGGAATTAACTTCCTTTGCATTGTGCGATTATGTGTATTTTAACATCAACATGCTATGCACATCCTCTCTTGTTTTCTAATGTAAATATTTAATCATTCCCAGCTATTCACACATTTCAGGGCAGGCATTTCATGTTTGACCCCCTGATGTTTTTTGTTGTTATCCATTTGATTGTCCCTCCTGCCGACTTCCCCCGAAATTACAAATCACGAGTCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13442338_13442897.mRNA False 2008 mRNA 0.40 3 13440853 13443219
TU87352 True 311 lncRNA 0.37 1 13441354 13441664

Neighbor

gene id symbol gene type direction distance location
CI01000012_13404454_13437477 HKDC1 coding upstream 3131 13404454 ~ 13437722 (+)
CI01000012_13391082_13401374 KIF1BP coding upstream 39161 13391082 ~ 13401692 (+)
CI01000012_13291350_13311094 NA coding upstream 128697 13291350 ~ 13312156 (+)
CI01000012_13102619_13168566 PRIM2 coding upstream 272287 13102619 ~ 13168566 (+)
CI01000012_13063943_13081607 NA coding upstream 358286 13062843 ~ 13082567 (+)
CI01000012_13445338_13452629 HK2, HKI, HK1, HK1.L coding downstream 1636 13444855 ~ 13452629 (+)
CI01000012_13471010_13484053 TSPAN15 coding downstream 27791 13471010 ~ 13486220 (+)
CI01000012_13498541_13510228 RUFY2 coding downstream 55322 13498541 ~ 13510265 (+)
CI01000012_13522084_13525252 PBLD2, PBLD coding downstream 78865 13522084 ~ 13525319 (+)
CI01000012_13527966_13529695 PBLDP, PBLD coding downstream 83965 13527184 ~ 13529762 (+)
G76569 NA non-coding upstream 51700 13388853 ~ 13389153 (+)
G76567 NA non-coding upstream 53475 13387048 ~ 13387378 (+)
G76566 NA non-coding upstream 54209 13386436 ~ 13386644 (+)
G76565 NA non-coding upstream 68309 13372080 ~ 13372544 (+)
G76519 NA non-coding upstream 223694 13216935 ~ 13217159 (+)
G76600 NA non-coding downstream 77773 13520992 ~ 13521318 (+)
G76594 NA non-coding downstream 95302 13538521 ~ 13539179 (+)
G76629 NA non-coding downstream 112774 13555993 ~ 13556230 (+)
CI01000012_13029637_13033226 RGS17 other upstream 401954 13029435 ~ 13038899 (+)
G76374 NA other upstream 691684 12745531 ~ 12749169 (+)
G76385 NA other upstream 765187 12630755 ~ 12675666 (+)
G75533 NA other upstream 2295114 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 3216566 10223697 ~ 10236276 (+)
G76645 NA other downstream 208640 13651859 ~ 13652234 (+)
G76656 NA other downstream 260268 13703487 ~ 13739731 (+)

Expression


Co-expression Network