CI01000012_13029637_13033226 (RGS17)


Basic Information

Item Value
gene id CI01000012_13029637_13033226
gene name RGS17
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13029435 ~ 13038899 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_13029637_13033226.mRNA
CTTTAAAAGCTTGAATGGCTATGTAGTGTAATAGCAGCTGGTAGGCTCCAAAATCTAGTTGTACCATAACTGTATAACCTTGCATGATGATCAACACAACATGTTTCAAATGCCACAGAGACTTTGCTGTGTCTAACACTTCTCTCCTCACCCTAGGAATGAAGACAGAAGGGAACGTTCAGAGAGGCAAACATGTACAAAGATGGATAGCATAGAAGCAACAGAGGAACAGCGTCCCACACTGGATGAGGTGATTGCCTGGTCACGGAGCTTTGAGATGATGATGCGCTCTCCAGAGGGAAGGGATGTTTTCCGGGAGTTCTTGCGGTCTGAGTACAGTGAAGAAAACCTGATGTTCTGGATCTCCTGTGAGGAACTGAAGAAAGAAACTAACCCATCAGCTATCGAAGAAAAAGCCAGGATCATTTATGAAGACTACGTCTCCATTCTTTCGCCAAAAGAGGTCAGCTTGGATTCACGGGTGAGGGAAGGCATCAACCAAAGCCTGGCAGAACCCAGCAGTACGATGTATGAGGAGGCCCAGCTACAGATCTACACCCTCATGCACAGAGACTCCTTCCCCCGATTTCTCAACTCATCTGTTTACAGGGATCTCCTTAACAGCAAGAGGGCCTGCTTAGACACCTAGGTTTCAGAAAGAACATTTGAGACAAAAAAGCCCCAAGGTGCCACTTTCAAAAGGTGTGATGTTTCTTATTTCAAGAGTGAGTAGTTAAGCAATTCTGAGCATCCACTAGTGACCCTGAAGTTGAGTTCTGTTTAAGTGCCAATACGAGCTGCTCAGGCAACTGTGACACAGAAAAACATGTAGGAAAACCGACAGATCCATACTTCCTACTCTCAACTTACTTGTCTTTTTCATTCACCTGTTTTGTCTCTTTTAAATCTTTTCTCTCTTCCTGTTTACTCTCTCTCTCTTTCTCTCATGTTCTTTCTACCTGATCCTTTTCATCTTTTATGCCTCACATGTCTGAGGACAGCTGAATAATGTTATTATTTTTTTTTAAGAAAATCAAAAAACAAACGGATAAGCGGTAGATGTTAAGCTAGAAAACCTTTGCATGATACAAGGTTATGGAATTTACTCCAGTTTGACATTTAAGCCCCGGACTACAATGTTTTTTGAA

Function

symbol description
rgs17 Is expressed in cranial ganglion; neurons; pectoral fin; and retinal ganglion cell layer. Orthologous to human RGS17 (regulator of G protein signaling 17).

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_13029637_13033226.mRNA False 1148 mRNA 0.43 3 13029435 13033725

Neighbor

gene id symbol gene type direction distance location
CI01000012_12930929_12947409 PHACTR2 coding upstream 82026 12930929 ~ 12947409 (+)
CI01000012_12892163_12901139 COG2 coding upstream 127720 12892163 ~ 12901715 (+)
CI01000012_12832011_12865894 GALT2, GALNT2 coding upstream 163541 12832011 ~ 12865894 (+)
CI01000012_12761469_12776431 URB2 coding upstream 252965 12761469 ~ 12776470 (+)
CI01000012_12733327_12736780 RAB4A coding upstream 292166 12733327 ~ 12737269 (+)
CI01000012_13063943_13081607 NA coding downstream 29118 13062843 ~ 13082567 (+)
CI01000012_13102619_13168566 PRIM2 coding downstream 68894 13102619 ~ 13168566 (+)
CI01000012_13291350_13311094 NA coding downstream 257625 13291350 ~ 13312156 (+)
CI01000012_13391082_13401374 KIF1BP coding downstream 357357 13391082 ~ 13401692 (+)
CI01000012_13404454_13437477 HKDC1 coding downstream 370729 13404454 ~ 13437722 (+)
G76392 NA non-coding upstream 50529 12978320 ~ 12978906 (+)
G76447 NA non-coding upstream 59109 12970102 ~ 12970326 (+)
G76446 NA non-coding upstream 60248 12968974 ~ 12969187 (+)
G76445 NA non-coding upstream 61054 12968113 ~ 12968381 (+)
G76444 NA non-coding upstream 64178 12964959 ~ 12965257 (+)
G76463 NA non-coding downstream 9123 13042848 ~ 13043228 (+)
G76464 NA non-coding downstream 11454 13045179 ~ 13046015 (+)
G76467 NA non-coding downstream 13379 13047104 ~ 13047405 (+)
G76465 NA non-coding downstream 16611 13050336 ~ 13050947 (+)
G76472 NA non-coding downstream 19130 13052855 ~ 13053106 (+)
G76374 NA other upstream 280266 12745531 ~ 12749169 (+)
G76385 NA other upstream 353769 12630755 ~ 12675666 (+)
G75533 NA other upstream 1883696 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2805148 10223697 ~ 10236276 (+)
G73578 NA other upstream 4661808 8366806 ~ 8367627 (+)
G76645 NA other downstream 618134 13651859 ~ 13652234 (+)
G76656 NA other downstream 669762 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006600 rgs17 coding NC_007124.7 CM002897.2 23728176 ~ 23756700 (-)