CI01000012_12892163_12901139 (COG2)


Basic Information

Item Value
gene id CI01000012_12892163_12901139
gene name COG2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12892163 ~ 12901715 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12892163_12901139.mRNA
ATGACCTTACCAAAGGGACCCGATTCTTTGTGTTTCGACAAAGACGAATTTATGAAGGATGATTTCGACGTGGACAAATTTGTGGCTGATTGCAGAAAGCGTGTCCAGCTGGAGGAGATGCGTGAAGATCTGGAGCAATATTACAGACTCCTCAAAACAGCCATGGTCGAGCTTATCAATAAAGACTATGCAGATTTTGTTAACCTGTCCACCAATCTTGTTGGAATGGATAAAGCCCTCAATCAGCTCTCTGTTCCTCTCGGCCAGTTACGTGAAGAGGTGCTGAGTTTGAGATCCTCTGTGAATGAAGTTATTGAAGCTATAGACAACCAGTTATCCAAGCAAGATGACATTCAAAAAAAGAAGCTCTGTGTGTTAAGACTCATCCAAGTTGTGAGATCAGTGGAGAAGATTGAGAAAATTCTTCACCAAAACACCAAAGATACAACGTCACTCGAGACCAGCAGTCCTCTTCTGGCAGGTCAGATCCTAGAGCGGATTGCCACCGAGTTCAACCAGTTACAATTTCATGCAGTCCAGAGCAAAGGAATGCCATTGCTTGATAAAGTCCGCCCGAGAATAGCAGGTATCACAGCTATGCTTCAGCAGTCTCTGGAAGGCTTATTGATCCAGGGCCTGCAGACGTCAAATGTAGATATCGTACGGCATTGCCTCAGGACATATGCCACCATCGATAAGACCAGGGATGCGGAGGCACTGGTCGGACAGGTCTTAGTCAAACCATACATGGATGAGGTTATAGTTGAACAGTTTGTCAAGTCCAACCCTAATGGTCTTAAGATGTTGTACACAAAGCTGTTGGAGTTTGTGCCACACCATTGTAGACTGCTGCGAGAGGTGACTGGTGGGGCAATCTCTAGTGATAAAGCCGACATTGTTCCAGGATATGACTTCCTGGTGAACTCTGTTTGGCCTGAAATCATTAGAGGTGTTGAAGAAAGAATCCCTTCCCTTTTTAATCCGGGAAACCCAGATGCATTTTATGAGAAATACACTGTCAGCATGGATTTTGTGCGCAAGTTTGAGAGGCAGTGTGGTTCCCAGGCGAGCGTAAAGAGGCTGCGAGCACATCCGTGCTACCAGAGCTTCCACAACAAATGGAACCTGCCAGTGTACTTCCAGCTACGGTTCAAGGAGATTGCTGGAAGTCTAGAAAATGCCATTGCCGATGGACTAAAGGCATCTCCAGCGGGCGGCAGCTACCACCTGCAGGTTACTGAGGTGTTGTGGAGCTGCGTGTGCAGGTGCTGGGCTGACCAGGTGTACCTGCCACCACTTGCTCATCGATTTTGGAAACTAACGTTGCAGCTGATCTCCAGATACGGCACCTTTCTTACAGAGGTTCTAACAAAAACATCACCTCCAGAGACTAACAAAGATTTGGTAAGACCGCTCCCAAGCTCCGCCTCCTCCACATCCAGCCGCACATCACAGGATGCAGACAGTGAATCCAGTGGCCCCACTGTTTTGTCTACAAAGCAGCTTGTCTTCATTGCAGCTGATGTTGATAAGTTACAAGGGCAGATTCCAGATATCTCTGAGATTATCAAGGCAAAATTGGAGGGTATTGGATTCAAAAACTTTACAGTCATTTCAGAAGCCTTGCAGGATTCCAGGGCGTTCCTGTACAGCTGCGTCCCCACGCTGAACAGCAGAATGACTCAGCATCTAACGGAAAGGAGCGTTCGTTTCCTGAAAAGCGCTTCAGAAGTCCCACGACTTTATCGAAGGACCAACAAGGAAGTTCCCACCAGAGCCTCAGCCTATATGGACAACGCACTTCGGCCACTCCATCAGCTGGTCACCGACTCCAAAAATGTGGTGAAAGACTCCATCATCCAGGAGTGGCTCCGGGTCACACTCTCAGACTGCACTCATAGATATTTTGAAACTATATCGGACGTGCTGAGTTCAGTGAGGAAGATGGAGGAAAGTCTAAAGAGGTTGAAACAGGCTAGGAAAACAGCCACCACCAGCAACGTAGGCATCAATGCAGGACCATCAGATGACAGTAAGATCCGCCTGCAGCTGGCACTGGATGTGGAGTATCTCGGAGAACAGATTCAGAAGATGGGTCTTCAGCCAAGTGACATCACCATGTTCTCTTCTTTGCTGGAACTGGTACAGGAGGCAAGAGATCTCGCCTCAACGGAGCAGACAGGGGCCTAAGCCACAGTGGCCCTGGAGGGGCCAGATCAAAAGTAGGGTCCAGAATGGTTCCTGATTCAAATGCCTTCAGAACACATGGCTCAGTATCTGCTCCATGAATGGTTTTATGGAGTCCTTCCATCCCTCAACTGTTCTAATAGCAGCTATATCGACCTGTCAGGAGAAGGAGCACACTAAAAGATGATTTAATCTGTGATAAGTTATTTATTGTTGAACTATATTGGATAATATGAAGTTCAGAAAAGTCATGTCATTTATGGTTCAAAATGAATAGAGTTTGTTGTATGAACCAATCAGAACTCAACATATAAAGTGCTATAAGTGTCTTGTCATATGTGGTTACAACAAAGAATTGCACATGACGCAGGTGTTTGGGTTGAGTTGTGTCTGTCAGAAGTTGTACTCTTCAGACATTAGCTCTGGTAAACCCTGACAAATAGCATCAACAGTGCAAACGCTAAAGAGGTTTAATGCTGATATTACCTCTGTTTTCCTTATTTTTAAAAAATATCAAATGGGTGTTGGAGTTTGTGTTTCACTGGGTAAGAATGGTCTCTATTAAAAAAAGATTTAACA

Function

symbol description
cog2 Predicted to be involved in Golgi organization and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIq. Orthologous to human COG2 (component of oligomeric golgi complex 2).

GO:

id name namespace
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K20289 COG2; conserved oligomeric Golgi complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12892163_12901139.mRNA True 2766 mRNA 0.46 18 12892163 12901715

Neighbor

gene id symbol gene type direction distance location
CI01000012_12832011_12865894 GALT2, GALNT2 coding upstream 26269 12832011 ~ 12865894 (+)
CI01000012_12761469_12776431 URB2 coding upstream 115693 12761469 ~ 12776470 (+)
CI01000012_12733327_12736780 RAB4A coding upstream 154894 12733327 ~ 12737269 (+)
CI01000012_12695280_12699262 RHOUA coding upstream 192737 12695280 ~ 12699426 (+)
CI01000012_12686685_12690637 TBP coding upstream 200996 12686685 ~ 12691167 (+)
CI01000012_12930929_12947409 PHACTR2 coding downstream 29214 12930929 ~ 12947409 (+)
CI01000012_13029637_13033226 RGS17 coding downstream 127720 13029435 ~ 13038899 (+)
CI01000012_13063943_13081607 NA coding downstream 161128 13062843 ~ 13082567 (+)
CI01000012_13102619_13168566 PRIM2 coding downstream 200904 13102619 ~ 13168566 (+)
CI01000012_13291350_13311094 NA coding downstream 389635 13291350 ~ 13312156 (+)
G76374 NA non-coding upstream 143121 12745531 ~ 12749169 (+)
G76419 NA non-coding upstream 174160 12717772 ~ 12718003 (+)
G76418 NA non-coding upstream 174491 12717464 ~ 12717672 (+)
G76384 NA non-coding upstream 206696 12685189 ~ 12685467 (+)
G76391 NA non-coding upstream 208255 12682731 ~ 12683908 (+)
G76372 NA non-coding downstream 371 12902086 ~ 12903289 (+)
G76434 NA non-coding downstream 7284 12908999 ~ 12909507 (+)
G76436 NA non-coding downstream 51851 12953566 ~ 12953765 (+)
G76437 NA non-coding downstream 52733 12954448 ~ 12955634 (+)
G76438 NA non-coding downstream 54038 12955753 ~ 12956076 (+)
G76385 NA other upstream 216497 12630755 ~ 12675666 (+)
G75533 NA other upstream 1746424 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2667876 10223697 ~ 10236276 (+)
G73578 NA other upstream 4524536 8366806 ~ 8367627 (+)
G76645 NA other downstream 750144 13651859 ~ 13652234 (+)
G76656 NA other downstream 801772 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006603 cog2 coding NC_007124.7 CM002897.2 23996070 ~ 24018916 (-)