CI01000012_12930929_12947409 (PHACTR2)


Basic Information

Item Value
gene id CI01000012_12930929_12947409
gene name PHACTR2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12930929 ~ 12947409 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12930929_12947409.mRNA
TGGACGGTCTGGAAAAATCTTCTCTGGCCAACTGTGATGTGGTGGTGGGAAGCTCGCAGTCTCCTCAGCTGAAAGGAAAGGGAGGAAAGCTCTCTTCTCTGGGAAAGATCTTTAAACCTTGGAAATGGAGAAAGAAGAGGACCAGTGATAAGTTTCAGGACCTCTCCAAAGTTCTGGAGAGGAAAATATCCACCAGGCAAACTCGAGAAGAGCTCATAAGAAAAGGTGTCCTTATTCCAGACCAAGATGATCCTTTGAACACAGAGACCTTGAATGGTCATGCAGTGCCCAGTGGAGTTACTGAAAAGGTCAAAGTGGACATTGAAACACCAGAACTGGTCCCTGAAGAAAAAGCTGACTTGGCGGCAGTGGCAGAGGACCCAGAAGAGGGGAATGACAGCAAGCGCAGCCCAAAGGCCAGTGAGTCAGCCGCTCCAAAAACCCCTACTAAAAAACACCAGACCACACTCCCAAAAACCTCTGGTGAGGCCACAAACTCAGGCGTGAAGAAAGGGGGCCAAGCAGGGGGTAAAAAGGTAACCAAGACCAATAAGCAGGTCTCCGCTCCTCCACCCAAACAAACCACCCGAACTGCCACTCGTGGCAATGCAAAAGCTACGAATCCTAAGAAAACTGCGGGCACATCCAAGAGTTCCACTCAGGCCTCAGGTCAGTCATCTTCATCGACCTGCTCGAAGACCCCAAAGAACAACAACTCAGAACTAACAACAGCACAAGCCAAGTCTGCCAAGAAAATCGCCCCCTCCAGGTCCCCGCGGCCCCCTTCCAAAACCCCGTCCGAGACTGTGGAAAGCTCCTCTAAAAAGGATCAAAGGAAAAAAGAATTAACTTCAAATGTTAATGAGAAGGCAGAGGAGAAATCTCAGGATGGGAAGGGTGCCGATCAACTTTCCGAGTCCTCTGCCGAGATGGACAAAAGACAGCCTCATGTTAACCAAGCCACAGAGGAAACATCTTTCACTGGATCCTCAAATGAACTTTCCTCAGACACTTTAGGTGAACCTGTGAGCACAGAGAGCGAGGAAGAGAAAAAGAGGGCAGACCAGACACAAAGGATTGTTGGGACTGAAGAGGGAGAGAGACAACAAACTGTCAATGTGGAAAGCCCAGAGGTGACCATCATTCCTGACTCCATTCGAGAAAGCCAGGCCAGCGACTCTGATTCAGATGGACCTATACTCTACAAGGACGAAGAAGAGGAGGATGAAGATGATGAGTATACCTCTAGTTCCCTTGCCAGCAAAATTAGACGCAGGGACACACTTGCTATCAAACTTGGCAACAGGCCCAGCAAGAAGGAGCTAGAAGAGAAAAACATTCTCCCACGGACCTCAGAGATGGAGCGACAGGAGCTATGGCAGCAGATCGGCTGTAAACTAGTGAGACGGCTGAGTCAAAGGCCCACCACAGAAGAGCTCGAACAGCGAAATATTCTGAAGCAGAAAAATGAGGAAGAAGAACAAGAGGCCAAGAAGGAGATTAAAAGAAGACTGTCCCGAAAGCTCAGCGTCCGGCCCACAGTGGCAGAGCTGGTGGCACGCAGAATTTTGCGGTTCAATGAATATGTGGAGGTCACAGATGCAAAAGACTATGATCGGCGTGCTGACAAGCCCTGGACCAGGTTGACCCCTGCAGACAAAGCTGCTATACGTAAAGAACTTAATGAATTTAAAAGCAAAGAAATGGAAGTCCATGAAGAAAGCAAACAGTTTACCAG

Function

symbol description
phactr2 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Human ortholog(s) of this gene implicated in Parkinson's disease and multiple sclerosis. Orthologous to human PHACTR2 (phosphatase and actin regulator 2).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12930929_12947409.mRNA True 1738 mRNA 0.49 11 12930929 12947409

Neighbor

gene id symbol gene type direction distance location
CI01000012_12892163_12901139 COG2 coding upstream 29214 12892163 ~ 12901715 (+)
CI01000012_12832011_12865894 GALT2, GALNT2 coding upstream 65035 12832011 ~ 12865894 (+)
CI01000012_12761469_12776431 URB2 coding upstream 154459 12761469 ~ 12776470 (+)
CI01000012_12733327_12736780 RAB4A coding upstream 193660 12733327 ~ 12737269 (+)
CI01000012_12695280_12699262 RHOUA coding upstream 231503 12695280 ~ 12699426 (+)
CI01000012_13029637_13033226 RGS17 coding downstream 82026 13029435 ~ 13038899 (+)
CI01000012_13063943_13081607 NA coding downstream 115434 13062843 ~ 13082567 (+)
CI01000012_13102619_13168566 PRIM2 coding downstream 155210 13102619 ~ 13168566 (+)
CI01000012_13291350_13311094 NA coding downstream 343941 13291350 ~ 13312156 (+)
CI01000012_13391082_13401374 KIF1BP coding downstream 443673 13391082 ~ 13401692 (+)
G76434 NA non-coding upstream 21422 12908999 ~ 12909507 (+)
G76372 NA non-coding upstream 27640 12902086 ~ 12903289 (+)
G76374 NA non-coding upstream 181887 12745531 ~ 12749169 (+)
G76419 NA non-coding upstream 212926 12717772 ~ 12718003 (+)
G76418 NA non-coding upstream 213257 12717464 ~ 12717672 (+)
G76436 NA non-coding downstream 6157 12953566 ~ 12953765 (+)
G76437 NA non-coding downstream 7039 12954448 ~ 12955634 (+)
G76438 NA non-coding downstream 8344 12955753 ~ 12956076 (+)
G76440 NA non-coding downstream 9531 12956940 ~ 12957297 (+)
G76441 NA non-coding downstream 13507 12960916 ~ 12962457 (+)
G76385 NA other upstream 255263 12630755 ~ 12675666 (+)
G75533 NA other upstream 1785190 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2706642 10223697 ~ 10236276 (+)
G73578 NA other upstream 4563302 8366806 ~ 8367627 (+)
G76645 NA other downstream 704450 13651859 ~ 13652234 (+)
G76656 NA other downstream 756078 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006601 phactr2 coding NC_007124.7 CM002897.2 23919480 ~ 23956361 (-)