G76463


Basic Information

Item Value
gene id G76463
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 13042848 ~ 13043228 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87242
ACTGGAGCGACAGGATGGGCCCAGGGCGATGTTGACAGAGCTTGAGGACTGCGTATCGCTGGTGTTTCCCCCCTCAGCTGCAGAGAGGCCTGAGATGACCAAGCCGCTGGAGAAGCTGCGTTTGCCAAAGAGCAGGCTCAGTGTGGAGCTGGAGGAAGACACCTGGCTGGAGCGATGGTGACCTGCGGCTGAAGCCAGAGGCCCTGTTGTGGATAAACGAGGCACCTGGGAAAAGACGGAGGCAATGGAGGAAGTGTTGAAGGACAGCTGGCTGTTGGACAGGCGCTGCACCAGCCCGGGACCTCCAGAGGCCGAGCCATGCTGGCTGTCCAGGATGGGGCCCGATCGGCTGGTGACGGGGGGCCGCTGGCCCTGAGGTTG

Function

NR:

description
PREDICTED: autism susceptibility gene 2 protein-like, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU87242 True 381 lncRNA 0.63 1 13042848 13043228

Neighbor

gene id symbol gene type direction distance location
CI01000012_13029637_13033226 RGS17 coding upstream 9123 13029435 ~ 13038899 (+)
CI01000012_12930929_12947409 PHACTR2 coding upstream 95439 12930929 ~ 12947409 (+)
CI01000012_12892163_12901139 COG2 coding upstream 141133 12892163 ~ 12901715 (+)
CI01000012_12832011_12865894 GALT2, GALNT2 coding upstream 176954 12832011 ~ 12865894 (+)
CI01000012_12761469_12776431 URB2 coding upstream 266378 12761469 ~ 12776470 (+)
CI01000012_13063943_13081607 NA coding downstream 19615 13062843 ~ 13082567 (+)
CI01000012_13102619_13168566 PRIM2 coding downstream 59391 13102619 ~ 13168566 (+)
CI01000012_13291350_13311094 NA coding downstream 248122 13291350 ~ 13312156 (+)
CI01000012_13391082_13401374 KIF1BP coding downstream 347854 13391082 ~ 13401692 (+)
CI01000012_13404454_13437477 HKDC1 coding downstream 361226 13404454 ~ 13437722 (+)
G76392 NA non-coding upstream 63942 12978320 ~ 12978906 (+)
G76447 NA non-coding upstream 72522 12970102 ~ 12970326 (+)
G76446 NA non-coding upstream 73661 12968974 ~ 12969187 (+)
G76445 NA non-coding upstream 74467 12968113 ~ 12968381 (+)
G76444 NA non-coding upstream 77591 12964959 ~ 12965257 (+)
G76464 NA non-coding downstream 1951 13045179 ~ 13046015 (+)
G76467 NA non-coding downstream 3876 13047104 ~ 13047405 (+)
G76465 NA non-coding downstream 7108 13050336 ~ 13050947 (+)
G76472 NA non-coding downstream 9627 13052855 ~ 13053106 (+)
G76473 NA non-coding downstream 10499 13053727 ~ 13054531 (+)
G76374 NA other upstream 293679 12745531 ~ 12749169 (+)
G76385 NA other upstream 367182 12630755 ~ 12675666 (+)
G75533 NA other upstream 1897109 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2818561 10223697 ~ 10236276 (+)
G76645 NA other downstream 608631 13651859 ~ 13652234 (+)
G76656 NA other downstream 660259 13703487 ~ 13739731 (+)

Expression


Co-expression Network