G78339 (cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855)


Basic Information

Item Value
gene id G78339
gene name cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1075785 ~ 1158877 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115936
tttttttttttttttttctttCAGTCTTCACACCCCTTCCTCCTCCAGATTTATTGatagtttaaaattacatttctatgTCCTAGAACTTCAGTTGCATTCACCTTCCGACTTAAAAACTGAGTACAAGCAAatgaaagtctttttttattatcattattattattattattattttagagtaGTCTAAGTGAtattgtacaaaaataacattttgatttcTGTGAAAACATTCGCCTTTCTTCGAactccaaatctgttttacgactctttcttttttttgttgtttttcttgtatTGAAGTTTTCACCTTGGGTAGAGCGACCTAATCTCCGTCCGTCCGCTTCGCCTGGGATCACGAACTAGGTTTTCGACGCGGCGGCCGCCCCGGATGATCGAGCAGCCcgcggttttttttttttttacaaaggatTTCTGAAACTGGCGTTACACGAGGTTTCCAGAATATGCTATAAAGTCGTTTGCTTAACGTCACGCGTTACGTATCTATTTTGTCGTCGTTTTCTCCACGGAGCTGCGCGCTGCTGGTTTGGCCCGGACAGACCCGACCGCGTGTGTCCCGTGCCGCTTTTCCAGGCCAATCGCTCGTAGGCTACCTCGGTCTcgtctgtaaaacaaaaaaaatgcaaatcgTTCGGAAGCGAGCGCTTCCCTGAtctctttacttttttactttttttttttttcttcccgaTCTCTCCGAGGCCGCGCTCCACGAGCCTCCAGAGGCCTATCCGACAAACGCTCAACACATCTCACACGTCCCTGTTCACCAGTGGCATGGAAAGGGGGTTCTTTAACAAAGCATTATACATAACACCTCTACcaaactaaacataaacatttttttttttgtattaaatgcagaaagtggaaagtttttttttccacccctttcctccttttaacatgtcgaGAGCTCACTGGCCTGGGAATAGCCTCTATCTGCCAACCGTTGGCCAGTGAAGAGGATTCAGAGAAAATAATACAACCATCAATCAGAAAAAGGAGGGGCGAGCGAGGAGACGGGACTAAGCGGTGGCCTCGATGGTGCACTCTTTGGCCACGTGGCCGGACTTCCCGCAGTTGTAGCAGTTGACTTCGCTGGCCTTGCTGCACTGTACGGCCACGTGTCCGATCTCTCCGCACCTGAGGAGCAGAGTTAGCGCCGGAAGTTAAAACACACTCCCATTTCACGCACGAGCAGTACGTTAAACCTCTCATCAATTGTGCAACGTTTAACTAAACTATTGCGTCGTGCATGTATAGTTTAACGGAAAAGACAGTactcttcatttttaaaacgtgaGATTGGGAGACGACAAACAAAGACGTCTTTCTAAACAACTAGCGGCGTCAACTGGGTCAACCGAACAAACACAGATGCACTCGTACGTCGGGTTTCGGCTCACCTGTAGCACTTGACCTTCTCGCAGCCCTTCTGGATGTGTCCGAATCCGCCACAGGAGTAGCACTTCTGCTCGTTGGCGTGGTCGCAGTCCCGGGCCATGTGTCCGGCTTTACCACAGTTATAGCAGACCTGCTCGCGCTCCTTCTTGGGCTCCTTGCAGTCCCTGGAGATGTGGCCGCCTCTGCCACAGTTGTAGCACGCTGCA
>TU115937
CGTGTAGATGGACGAGCGCGGAGCAGCGAGATGAGAGCActcagaaaagaaagaaacgtCAGTCTTCACACCCCTTCCTCCTCCAGATTTATTGatagtttaaaattacatttctatgTCCTAGAACTTCAGTTGCATTCACCTTCCGACTTAAAAACTGAGTACAAGCAAatgaaagtctttttttattatcattattattattattattattttagagtaGTCTAAGTGAtattgtacaaaaataacattttgatttcTGTGAAAACATTCGCCTTTCTTCGAactccaaatctgttttacgactctttcttttttttgttgtttttcttgtatTGAAGTTTTCACCTTGGGTAGAGCGACCTAATCTCCGTCCGTCCGCTTCGCCTGGGATCACGAACTAGGTTTTCGACGCGGCGGCCGCCCCGGATGATCGAGCAGCCcgcggttttttttttttttacaaaggatTTCTGAAACTGGCGTTACACGAGGTTTCCAGAATATGCTATAAAGTCGTTTGCTTAACGTCACGCGTTACGTATCTATTTTGTCGTCGTTTTCTCCACGGAGCTGCGCGCTGCTGGTTTGGCCCGGACAGACCCGACCGCGTGTGTCCCGTGCCGCTTTTCCAGGCCAATCGCTCGTAGGCTACCTCGGTCTcgtctgtaaaacaaaaaaaatgcaaatcgTTCGGAAGCGAGCGCTTCCCTGAtctctttacttttttactttttttttttttcttcccgaTCTCTCCGAGGCCGCGCTCCACGAGCCTCCAGAGGCCTATCCGACAAACGCTCAACACATCTCACACGTCCCTGTTCACCAGTGGCATGGAAAGGGGGTTCTTTAACAAAGCATTATACATAACACCTCTACcaaactaaacataaacatttttttttttgtattaaatgcagaaagtggaaagtttttttttccacccctttcctccttttaacatgtcgaGAGCTCACTGGCCTGGGAATAGCCTCTATCTGCCAACCGTTGGCCAGTGAAGAGGATTCAGAGAAAATAATACAACCATCAATCAGAAAAAGGAGGGGCGAGCGAGGAGACGGGACTAAGCGGTGGCCTCGATGGTGCACTCTTTGGCCACGTGGCCGGACTTCCCGCAGTTGTAGCACTTGACCTTCTCGCAGCCCTTCTGGATGTGTCCGAATCCGCCACAGGAGTAGCACTTCTGCTCGTTGGCGTGGTCGCAGTCCCGGGCCATGTGTCCGGCTTTACCACAGTTATAGCAGACCTGCTCGCGCTCCTTCTTGGGCTCCTTGCAGTCCCTGGAGATGTGGCCGCCTCTGCCACAGTTGTAGCACGCTGCA
>TU115939
ttttttttttttttctttttttgtcCCCCTTCCTCCTCCAGATTTATTGatagtttaaaattacatttctatgTCCTAGAACTTCAGTTGCATTCACCTTCCGACTTAAAAACTGAGTACAAGCAAatgaaagtctttttttattatcattattattattattattattttagagtaGTCTAAGTGAtattgtacaaaaataacattttgatttcTGTGAAAACATTCGCCTTTCTTCGAactccaaatctgttttacgactctttcttttttttgttgtttttcttgtatTGAAGTTTTCACCTTGGGTAGAGCGACCTAATCTCCGTCCGTCCGCTTCGCCTGGGATCACGAACTAGGTTTTCGACGCGGCGGCCGCCCCGGATGATCGAGCAGCCcgcggttttttttttttttacaaaggatTTCTGAAACTGGCGTTACACGAGGTTTCCAGAATATGCTATAAAGTCGTTTGCTTAACGTCACGCGTTACGTATCTATTTTGTCGTCGTTTTCTCCACGGAGCTGCGCGCTGCTGGTTTGGCCCGGACAGACCCGACCGCGTGTGTCCCGTGCCGCTTTTCCAGGCCAATCGCTCGTAGGCTACCTCGGTCTcgtctgtaaaacaaaaaaaatgcaaatcgTTCGGAAGCGAGCGCTTCCCTGAtctctttacttttttactttttttttttttcttcccgaTCTCTCCGAGGCCGCGCTCCACGAGCCTCCAGAGGCCTATCCGACAAACGCTCAACACATCTCACACGTCCCTGTTCACCAGTGGCATGGAAAGGGGGTTCTTTAACAAAGCATTATACATAACACCTCTACcaaactaaacataaacatttttttttttgtattaaatgcagaaagtggaaagtttttttttccacccctttcctccttttaacatgtcgaGAGCTCACTGGCCTGGGAATAGCCTCTATCTGCCAACCGTTGGCCAGTGAAGAGGATTCAGAGAAAATAATACAACCATCAATCAGAAAAAGGAGGGGCGAGCGAGGAGACGGGACTAAGCGGTGGCCTCGATGGTGCACTCTTTGGCCACGTGGCCGGACTTCCCGCAGTTGTAGCAGTTGACTTCGCTGGCCTTGCTGCACTGTACGGCCACGTGTCCGATCTCTCCGCCACCTGTAGCACTTGACCTTCTCGCAGCCCTTCTGGATGTGTCCGAATCCGCCACAGGAGTAGCACTTCTGCTCGTTGGCGTGGTCGCAGTCCCGGGCCATGTGTCCGGCTTTACCACAGTTATAGCAGACCTGCTCGCGCTCCTTCTTGGGCTCCTTGCAGTCCCTGGAGATGTGGCCGCCTCTGCCACAGTTGTAGCACGCTGCA
>TU115940
tttttattatttttttttttttttatttgtcTTCACACCCCTTCCTCCTCCAGATTTATTGatagtttaaaattacatttctatgTCCTAGAACTTCAGTTGCATTCACCTTCCGACTTAAAAACTGAGTACAAGCAAatgaaagtctttttttattatcattattattattattattattttagagtaGTCTAAGTGAtattgtacaaaaataacattttgatttcTGTGAAAACATTCGCCTTTCTTCGAactccaaatctgttttacgactctttcttttttttgttgtttttcttgtatTGAAGTTTTCACCTTGGGTAGAGCGACCTAATCTCCGTCCGTCCGCTTCGCCTGGGATCACGAACTAGGTTTTCGACGCGGCGGCCGCCCCGGATGATCGAGCAGCCcgcggttttttttttttttacaaaggatTTCTGAAACTGGCGTTACACGAGGTTTCCAGAATATGCTATAAAGTCGTTTGCTTAACGTCACGCGTTACGTATCTATTTTGTCGTCGTTTTCTCCACGGAGCTGCGCGCTGCTGGTTTGGCCCGGACAGACCCGACCGCGTGTGTCCCGTGCCGCTTTTCCAGGCCAATCGCTCGTAGGCTACCTCGGTCTcgtctgtaaaacaaaaaaaatgcaaatcgTTCGGAAGCGAGCGCTTCCCTGAtctctttacttttttactttttttttttttcttcccgaTCTCTCCGAGGCCGCGCTCCACGAGCCTCCAGAGGCCTATCCGACAAACGCTCAACACATCTCACACGTCCCTGTTCACCAGTGGCATGGAAAGGGGGTTCTTTAACAAAGCATTATACATAACACCTCTACcaaactaaacataaacatttttttttttgtattaaatgcagaaagtggaaagtttttttttccacccctttcctccttttaacatgtcgaGAGCTCACTGGCCTGGGAATAGCCTCTATCTGCCAACCGTTGGCCAGTGAAGAGGATTCAGAGAAAATAATACAACCATCAATCAGAAAAAGGAGGGGCGAGCGAGGAGACGGGACTAAGCGGTGGCCTCGATGGTGCACTCTTTGGCCACGTGGCCGGACTTCCCGCAGTTGTAGCAGTTGACTTCGCTGGCCTTGCTGCACTGTACGGCCACGTGTCCGATCTCTCCGCACTGTAGCACTTGACCTTCTCGCAGCCCTTCTGGATGTGTCCGAATCCGCCACAGGAGTAGCACTTCTGCTCGTTGGCGTGGTCGCAGTCCCGGGCCATGTGTCCGGCTTTACCACAGTTATAGCAGACCTGCTCGCGCTCCTTCTTGGGCTCCTTGCAGTCCCTGGAGATGTGGCCGCCTCTGCCACAGTTGTAGCACGCTGCA

Function

symbol description
cnbpb Predicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Involved in positive regulation of innate immune response. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Orthologous to several human genes including CNBP (CCHC-type zinc finger nucleic acid binding protein).
cnbp Enables G-quadruplex DNA binding activity. Involved in G-quadruplex DNA formation and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; endoplasmic reticulum; and nucleus. Predicted to be active in cytoplasm. Implicated in myotonic dystrophy type 2.

NR:

description
PREDICTED: cellular nucleic acid-binding protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115936 True 1637 lncRNA 0.46 2 1075785 1117463
TU115937 False 1349 lncRNA 0.47 2 1075785 1077459
TU115939 False 1368 lncRNA 0.47 3 1075785 1158877
TU115940 False 1378 lncRNA 0.46 3 1075785 1121366

Neighbor

gene id symbol gene type direction distance location
raf1b raf1,raf1b,LOC107742031,LOC107675968,LOC107571214 coding downstream 5286 1054577 ~ 1070499 (-)
mkrn2os.1 NA coding downstream 29829 1044079 ~ 1045956 (-)
mkrn2os.2 LOC107758069,LOC107687314,LOC107564281 coding downstream 32366 1040367 ~ 1043419 (-)
LOC122353725 timp4,LOC107571219,LOC107667868,LOC107564284,LOC107687318,LOC107742036 coding downstream 85523 985343 ~ 990262 (-)
LOC122353727 NA coding downstream 95669 977597 ~ 980116 (-)
trnac-gca_104 NA coding upstream 107 1158984 ~ 1159055 (-)
trnac-gca_105 NA coding upstream 316 1159193 ~ 1159263 (-)
trnac-gca_106 NA coding upstream 536 1159413 ~ 1159483 (-)
trnac-gca_107 NA coding upstream 967 1159844 ~ 1159915 (-)
trnac-gca_108 NA coding upstream 1182 1160059 ~ 1160130 (-)
G78338 NA non-coding downstream 1329 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 23241 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 25849 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 51975 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 168211 905807 ~ 907574 (-)
G78354 NA non-coding upstream 9445 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 44999 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 53399 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 122855 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 128416 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 100998 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 281649 599107 ~ 794136 (-)
G78170 NA other downstream 619787 453134 ~ 455998 (-)
G78144 alas1 other downstream 626884 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 670374 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 58342 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 429827 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 545747 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1654475 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1660711 2819588 ~ 2830203 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G50143 NA non-coding NC_053116.1 CM020913.1 15952530 ~ 15956672 (-)