G78338


Basic Information

Item Value
gene id G78338
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1072546 ~ 1074456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115930
agagagagagagacagagagagagagagagacagagagagagagagagagagagagagagagagagagacagagagagagagagagagagagacagagagagagacagacagagagagagagagacagagacagacagagagagagagagacagagagagacagagagagagagagacagagagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagacagagagagacagagagagagagagacagagagagagagagagagagagagacagagagagacagagagagagagagacagagagagagagagagagagagacagagagagagagagagagacagagagacagagagagagagagacagagagagaaagagagacagaggccAGGTGAAGATTACACTTCATGCACAACAGCACTAAACCACAAGGTGTTTGCAAGCAAAGTCATTCAAGAAAACTTCTTTCTCAAACGACTTGATTATTCGCTTTTTAAAAAGGCTATTTGCATGGCAATCTCAGAATAAATTACAACAGGATTACGAAGACATTTCAGATCAACGCTGAAGTCTCtctctataaaataaatcaggCCTCTGGATAAAAGCGTTGTCTGTTTACattgaaaactaaatattttatactaaaataaaatactcttcAGTCGTTTTAGTTGACAAGGGGTGAGTATGATGCTGGTTCTtcgcctttaaaaaaaatatgtatgtgcaAATGATCTAACTGTGTAAACAGATTTAAGTAAATACGATTTGCATTCCCTTTAAATGTCACTGAAActaatttgcattaataaaaaaaaaaaaaagccatttccaaaaaaactaTACATGGTTTTATTCGTTAACATCCCCTCTATTAACTTTCTCTGACTTTTGAGAGCGACGCTTCTCCGTCGGGTCGGTTCTTGCGCTCGAGAACCGATTCCTTGGAAAGATTCGACTCTAAAAACGACTCGCTCACGAACCGAACTTGGCCACAGCTGTCATTTGACACATCGCACATTAAAACACGTGGTGCGTTTATGCACGAACTACTTCAACGAGTCAAAAACGCACGGACCCGGACAGCGTTTGTGTGTATCGTTGGCGAGGGCGATTAAAACCGGACCCCGAAAGAACTTCACAAACCGAACCAGAACGCGTCTATTGTGGACAAAAATGCTGTCCGGTGTAAACACAGCAAACGCGCGTGGACTCGGCAGAGACGGCGTGTTCAAATTCGCCGCGCGATCTCCCGCGTCTGCAGCATAACACTGGATCAAAACAAGATGAAGCTCCGGAGACACGATGAAGATCAGCGGTGGTCTTCAGGGCTGATTCCCGGCCTGTCCGCTCACCCGCTCCCTCGCGCTGCTTCCCGCTGACCCTCTCGCCCATCCGGTCCCGCGGACACTTTATATCTATCCTTCGGCTACGTGCGCGCGTTCGGCCGGTAACTGCGTTCGCGAGTTTCGATCGCGCTCGTCGCGGGAGCGGCGTGACTTTCCCGCTCGCAGCCTGTCGCAGTAGGCCAAAGTGCGCCGCCAGAAAACCTCACTTCTGTACCTTTCTGGACGCGCTCGCCCTCAACGGCTCGCCTTACAAACGCAGCTCCGGCGCCTCGGCACGGCGGGGACGCTCTCCGAGACCGCGGCGACGGCACCGCGTCGTAAGCATCGAGCTAAATGTCGTGTTTTCGTCCTTTAAGGGAACTCACCTCGGCGACGTGACTGTAGC
>TU115932
AACTTTCTCTGACTTTTGAGAGCGACGCTTCTCCGTCGGGTCGGTTCTTGCGCTCGAGAACCGATTCCTTGGAAAGATTCGACTCTAAAAACGACTCGCTCACGAACCGAACTTGGCCACAGCTGTCATTTGACACATCGCACATTAAAACACGTGGTGCGTTTATGCACGAACTACTTCAACGAGTCAAAAACGCACGGACCCGGACAGCGTTTGTGTGTATCGTTGGCGAGGGCGATTAAAACCGGACCCCGAAAGAACTTCACAAACCGAACCAGAACGCGTCTATTGTGGACAAAAATGCTGTCCGGTGTAAACACAGCAAACGCGCGTGGACTCGGCAGAGACGGCGTGTTCAAATTCGCCGCGCGATCTCCCGCGTCTGCAGCATAACACTGGATCAAAACAAGATGAAGCTCCGGAGACACGATGAAGATCAGCGGTGGTCTTCAGGGCTGATTCCCGGCCTGTCCGCTCACCCGCTCCCTCGCGCTGCTTCCCGCTGACCCTCTCGCCCATCCGGTCCCGCGGACACTTTATATCTATCCTTCGGCTACGTGCGCGCGTTCGGCCGGTAACTGCGTTCGCGAGTTTCGATCGCGCTCGTCGCGGGAGCGGCGTGACTTTCCCGCTCGCAGCCTGTCGCAGTAGGCCAAAGTGCGCCGCCAGAAAACCTCACTTCTGTACCTTTCTGGACGCGCTCGCCCTCAACGGCTCGCCTTACAAACGCAGCTCCGGCGCCTCGGCACGGCGGGGACGCTCTCCGAGACCGCGGCGACGGCACCGCGTCGTAAGCATCGAGCTAAATGTCGTGTTTTCGTCCTTTAAGGGAACTCACCTCGGCGACGTGACTGTAGC
>TU115933
AACTTTCTCTGACTTTTGAGAGCGACGCTTCTCCGTCGGGTCGGTTCTTGCGCTCGAGAACCGATTCCTTGGAAAGATTCGACTCTAAAAACGACTCGCTCACGAACCGAACTTGGCCACAGCTGTCATTTGACACATCGCACATTAAAACACGTGGTGCGTTTATGCACGAACTACTTCAACGAGTCAAAAACGCACGGACCCGGACAGCGTTTGTGTGTATCGTTGGCGAGGGCGATTAAAACCGGACCCCGAAAGAACTTCACAAACCGAACCAGAACGCGTCTATTGTGGACAAAAATGCTGTCCGGTGTAAACACAGCAAACGCGCGTGGACTCGGCAGAGACGGCGTGTTCAAATTCGCCGCGCGATCTCCCGCGTCTGCAGCATAACACTGGATCAAAACAAGATGAAGCTCCGGAGACACGATGAAGATCAGCGGTGGTCTTCAGGGCTGATTCCCGGCCTGTCCGCTCACCCGCTCCCTCGCGCTGCTTCCCGCTGACCCTCTCGCCCATCCGGTCCCGCGGACACTTTATATCTATCCTTCGGCTACGTGCGCGCGTTCGGCCGGTAACTGCGTTCGCGAGTTTCGATCGCGCTCGTCGCGGGAGCGGCGTGACTTTCCCGCTCGCAGCCTGTCGCAGTAGGCCAAAGTGCGCCGCCAGAAAACCTCACTTCTGTACCTTTCTGGACGCGCTCGCCCTCAACGGCTCGCCTTACAAACGCAGCTCCGGCGCCTCGGCACGGCGGGGACGCTCTCCGAGACCGCGGCGACGGCACCGCGTCGTAAGCATCGAGCTAAATGTCGTGTTTTCGTCCTTTAAGGGAACTCACCTCGGCGACGTGACTGTAGCTGTTTATGTTCCTCCTCTCTGCGCTGCGCCACACGCGCTCTGCGCACGGCACGCGACTTCTCCGCCCCGCCCACCGCGCTCTGCGCACGACCCTGAtagcgcgcgcgcgctcgccTCCGACGCAGCTGTCCGTGACGCTCCTGAgggg
>TU115934
GATGAAGCTCCGGAGACACGATGAAGATCAGCGGTGGTCTTCAGGGCTGATTCCCGGCCTGTCCGCTCACCCGCTCCCTCGCGCTGCTTCCCGCTGACCCTCTCGCCCATCCGGTCCCGCGGACACTTTATATCTATCCTTCGGCTACGTGCGCGCGTTCGGCCGGTAACTGCGTTCGCGAGTTTCGATCGCGCTCGTCGCGGGAGCGGCGTGACTTTCCCGCTCGCAGCCTGTCGCAGTAGGCCAAAGTGCGCCGCCAGAAAACCTCACTTCTGTACCTTTCTGGACGCGCTCGCCCTCAACGGCTCGCCTTACAAACGCAGCTCCGGCGCCTCGGCACGGCGGGGACGCTCTCCGAGACCGCGGCGACGGCACCGCGTCGTAAGCATCGAGCTAAATGTCGTGTTTTCGTCCTTTAAGGGAACTCACCTCGGCGACGTGACTGTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115930 True 1763 lncRNA 0.49 1 1072694 1074456
TU115932 False 858 lncRNA 0.58 1 1072694 1073551
TU115933 False 1006 lncRNA 0.60 1 1072546 1073551
TU115934 False 449 lncRNA 0.63 1 1072694 1073142

Neighbor

gene id symbol gene type direction distance location
raf1b raf1,raf1b,LOC107742031,LOC107675968,LOC107571214 coding downstream 2047 1054577 ~ 1070499 (-)
mkrn2os.1 NA coding downstream 26590 1044079 ~ 1045956 (-)
mkrn2os.2 LOC107758069,LOC107687314,LOC107564281 coding downstream 29127 1040367 ~ 1043419 (-)
LOC122353725 timp4,LOC107571219,LOC107667868,LOC107564284,LOC107687318,LOC107742036 coding downstream 82284 985343 ~ 990262 (-)
LOC122353727 NA coding downstream 92430 977597 ~ 980116 (-)
rab43 rab43,LOC107758163,LOC107700634,LOC107675972,LOC107742026 coding upstream 18816 1093272 ~ 1097710 (-)
trnac-gca_5 NA coding upstream 31889 1106345 ~ 1106416 (-)
trnac-gca_6 NA coding upstream 32323 1106779 ~ 1106850 (-)
trnac-gca_7 NA coding upstream 32533 1106989 ~ 1107060 (-)
trnac-gca_8 NA coding upstream 32749 1107205 ~ 1107276 (-)
G78331 NA non-coding downstream 20002 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 22610 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 48736 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 164972 905807 ~ 907574 (-)
G78226 slc6a11,LOC107746711,LOC107686974,LOC107561801,LOC107697565,LOC107750026 non-coding downstream 348982 722464 ~ 723564 (-)
G78339 cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855 non-coding upstream 1329 1075785 ~ 1158877 (-)
G78354 NA non-coding upstream 93866 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 129420 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 137820 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 207276 1281732 ~ 1284944 (-)
LOC122353728 NA other downstream 97759 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 278410 599107 ~ 794136 (-)
G78170 NA other downstream 616548 453134 ~ 455998 (-)
G78144 alas1 other downstream 623645 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 667135 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 142763 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 514248 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 630168 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1738896 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1745132 2819588 ~ 2830203 (-)

Expression


Co-expression Network