trnac-gca_7


Basic Information

Item Value
gene id trnac-gca_7
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1106989 ~ 1107060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1477
gggggtatagctcagtggtggagcatttgactgcagatcaagaggtcccaggttcaaatccgggtgccccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1477 True 72 tRNA 0.57 1 1106989 1107060

Neighbor

gene id symbol gene type direction distance location
trnac-gca_6 NA coding downstream 139 1106779 ~ 1106850 (-)
trnac-gca_5 NA coding downstream 573 1106345 ~ 1106416 (-)
rab43 rab43,LOC107758163,LOC107700634,LOC107675972,LOC107742026 coding downstream 9279 1093272 ~ 1097710 (-)
raf1b raf1,raf1b,LOC107742031,LOC107675968,LOC107571214 coding downstream 36490 1054577 ~ 1070499 (-)
mkrn2os.1 NA coding downstream 61033 1044079 ~ 1045956 (-)
trnac-gca_8 NA coding upstream 145 1107205 ~ 1107276 (-)
trnac-gca_9 NA coding upstream 363 1107423 ~ 1107494 (-)
trnac-gca_10 NA coding upstream 585 1107645 ~ 1107716 (-)
trnac-gca_11 NA coding upstream 1681 1108741 ~ 1108812 (-)
trnac-gca_12 NA coding upstream 1893 1108953 ~ 1109024 (-)
G78338 NA non-coding downstream 32533 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 54445 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 57053 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 83179 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 199415 905807 ~ 907574 (-)
G78354 NA non-coding upstream 61262 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 96816 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 105216 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 174672 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 180233 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 132202 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 312853 599107 ~ 794136 (-)
G78170 NA other downstream 650991 453134 ~ 455998 (-)
G78144 alas1 other downstream 658088 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 701578 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 110159 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 481644 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 597564 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1706292 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1712528 2819588 ~ 2830203 (-)

Expression


Co-expression Network