G80562


Basic Information

Item Value
gene id G80562
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 10446450 ~ 10447785 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119142
gagcttaattttttatttatttatttattttttttagacgtTGTCCGATGACGTCCCGAGCTTTACAGGATGCGCTGGAGCAGATGAATCATTTTTTAAGCATGTCTCCtttgtgcgagtgtgtgtgtgtgtgtgtgtcgctgtgGGTGTGTTGCGTTTCTCGCTCGCTCGCTGTTGTTTGAAAGAGGCCTGAATGACTGAGTTCACTGTTAACCTGGAAAGAAGGCTGGTTATGTAACGAGCTTTCAAAACTGCCCCAGAATCCGGCTGATAGCTCCTCGCCCTCCCTCCTTGTGTCGCGCATCACACACTCGCTCCGTGCCTGTTTGGCTCCAGAAAAGTAGGGCAGGATTTTCCTCTCcgctcttcttttctttttttttttccccgtcgTCCTGTGCGAGCGTGCATGAGCAGCCCTCCACCGCTCAGCTGATTACTGACTTatgtaagggaaaaaaaacgagTGAAAGTAGGACAGGATATACCAGACCGAAAACTACATAACCAGAGGGACGCTTTTATTCATAGAAGGAACTGAAAGTTTTCCTTTAGGATTTAGTTTGGGATGTTGCGTTCCTAGAACGCGGTTTATTATCAGTACCTCGTTTTGAACTCAGAAGCAAATGAAAGCAGTTTTAGGCTTTTCTTGGGAAAGCAAGCGCTCTGTGTGAATcgtgtgcttgtttgtgtgaatgtgtggaCTGTGCCAGGCTTGTAGCGCTCGGGACGGTGTTGGAGACAGATGGTGTAAAATCAGtctaagcagggatgccc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119142 True 777 lncRNA 0.46 2 10446450 10447785

Neighbor

gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC106591986,LOC100698633,LOC106588008,LOC103378951,LOC106562755 coding upstream 180765 10259698 ~ 10265685 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652 coding upstream 567243 9870254 ~ 9879207 (+)
nxph2b nxph2b,LOC107686003,LOC107551792,LOC107715780,LOC107572939,LOC107687746,LOC107718217 coding upstream 655824 9785040 ~ 9790626 (+)
si:ch211-227n13.3 NA coding upstream 661545 9781131 ~ 9784905 (+)
phka2 phka2,LOC107718215,LOC107715813,LOC107685996,LOC107677496,LOC107573346 coding upstream 665711 9765169 ~ 9780739 (+)
LOC122354282 gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 coding downstream 263663 10711448 ~ 10715250 (+)
LOC122354281 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 268744 10716529 ~ 10721599 (+)
LOC122354278 LOC107654948,LOC107705440,LOC107736540,LOC107682154,LOC100538248 coding downstream 278366 10726151 ~ 10734638 (+)
LOC122354395 hrasls,LOC107569888,LOC107713876,LOC107693015,LOC108435900 coding downstream 313072 10760857 ~ 10761894 (+)
LOC122353582 NA coding downstream 590358 11038143 ~ 11042220 (+)
G80554 NA non-coding upstream 88897 10356232 ~ 10357553 (+)
G80511 NA non-coding upstream 114562 10325650 ~ 10331888 (+)
G80509 NA non-coding upstream 124112 10321670 ~ 10322338 (+)
G80525 NA non-coding upstream 202379 10243868 ~ 10244071 (+)
G80531 dennd4a,LOC107596978 non-coding upstream 203029 10239845 ~ 10243421 (+)
G80621 NA non-coding downstream 119422 10567207 ~ 10570213 (+)
G80630 NA non-coding downstream 127619 10575404 ~ 10575994 (+)
G80632 NA non-coding downstream 180769 10628554 ~ 10628959 (+)
G80641 NA non-coding downstream 246331 10694116 ~ 10694638 (+)
G80700 NA non-coding downstream 463404 10911189 ~ 10911883 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 906329 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1021148 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 1467209 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 1564794 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 1567462 8875288 ~ 8878988 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 18837 10466622 ~ 10471187 (+)
G80638 NA other downstream 193347 10641132 ~ 10661970 (+)
G80761 NA other downstream 774562 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 1057868 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 1077238 11525023 ~ 11527042 (+)

Expression


Co-expression Network