LOC122353511


Basic Information

Item Value
gene id LOC122353511
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1949640 ~ 1953102 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251246.1
GTTTATTAATTTGCCTGCATGGACACGGGTCGTTGCGCTCAGATGGGGTGGCAGTAAAGTGGTTTCGTATGCGAAACGTCTGCATTTTTGCAGAGTTTTGTAAGTAGTACGTGTTCCTGATATAGCAAATCTTTCAGTGGATGTTTTTCAAAGACAATGAAAAGGGCTTCGTCGAGACCTCAACAACTCAAAGATCAGCTCCTTCAGGCCATCGATTCTCTAAATAATcagATACAGAACATGATGGCTTTTTTGGATGTGATATGCTGCCTGGAGAAGCACCCCATGACTAAAGAGGCTCTAATGGAAACCAGGCTTGGAAAGCTGATCAACGATGTGAGAAAAAGGTGCACGGATGAAGACCTTGTTAAACGTTTAAAAAGTCTTATACGCCGTTGGCAGAGGCTGGTGGAGGTAAATGAAGTCACAGCGAAAGAGCTCTCAAGCCCTGCAGACAATTCAACATCTGCTGAATGCGTTTCTGGATCAACACATACCCCTGTTGAAAATTACAGCAGAGCTCGTCTTCACAGCGCCACTGGAGAGAGGACTGAATTGTCCGAGGATTCTGTCCCAGCTAAAACCGTAAAATATCCaaataattttagaaaaagtaaaatacctATCCGTGCAATCAAACCATATTCCTCGTCCATCAAGCGTATATCTCTGTCCGATCATCATTCCCAAAATGCCAATGGTATCGCACACCAGCACAAGTTTGAAAGAAACACCACCTCTGCCGATCACACTGACGAAAAGCGCTTTTTGGCTGCCAAGGCACCGGGGCAATCCACTCCACTTTCCATTGCTTCCAATCTACAAAATACATACAAAGGTCCTTCAGACCTTCTCAACATACTCAAACCTGCTACGCTAAATGGTAATCTCAATGAGGTCTCCAGCACAGTGTCAGACGCAAACATAATGGGTTATGAGGATAAGACGAGCAAGAAACGGCGTAACATTCACACCGCCAAAGTCGATGGAGAAGACAAACTAGCGTTTGACCCCCGTACTCAACAAATCAAACCCGTATCGAGCAAAACATTGGCAAAAGATTGCCAGAGATCAACGGGAAGCGAAATCCAGGACAGCGAGCATCTGAAAAACAGCCTTTGTTTATTCGAACAGAGAAACTTTCGGAGAGAGACGTCACAAAGCAAGATGATTCAGAATAGCTTACTGACTCCTGAAAAGGCAGGGATGAGCTTTTCTCTGGGTGATATAAGAAAAACCCACGGGTTTATTCCAGAGTTCCCTGTCACAGACCTTCCAGGGGTCAGCCGAGAGGTCACCGAGCGGGACCTCATCAGGATGAGCAGTCAGCGGTGGCATGGGGTGAACGGCTGCTACGATAACGGGAATAACTGGTATGACTGGACTCAGTCCTTCACCCTGGATCCATACGGAGATGGGAGTAAACTTAAGATTCTGCCTTATGTTGGAATAGATTACAGACTTTGAGTTTTCA
>XM_043251247.1
TTATTAATTTGCCTGCATGGACACGGGTCGTTGCGCTCAGATGGGGTGGCAGTAAAGTGGTTTCGTATGCGAAACGTCTGCATTTTTGCAGAGTTTTGTAAGTAGTACGTGTTCCTGATATAGCAAATCTTTCAGTGGATGTTTTTCAAAGACAATGAAAAGGGCTTCGTCGAGACCTCAACAACTCAAAGATCAGCTCCTTCAGGCCATCGATTCTCTAAATAATATACAGAACATGATGGCTTTTTTGGATGTGATATGCTGCCTGGAGAAGCACCCCATGACTAAAGAGGCTCTAATGGAAACCAGGCTTGGAAAGCTGATCAACGATGTGAGAAAAAGGTGCACGGATGAAGACCTTGTTAAACGTTTAAAAAGTCTTATACGCCGTTGGCAGAGGCTGGTGGAGGTAAATGAAGTCACAGCGAAAGAGCTCTCAAGCCCTGCAGACAATTCAACATCTGCTGAATGCGTTTCTGGATCAACACATACCCCTGTTGAAAATTACAGCAGAGCTCGTCTTCACAGCGCCACTGGAGAGAGGACTGAATTGTCCGAGGATTCTGTCCCAGCTAAAACCGTAAAATATCCaaataattttagaaaaagtaaaatacctATCCGTGCAATCAAACCATATTCCTCGTCCATCAAGCGTATATCTCTGTCCGATCATCATTCCCAAAATGCCAATGGTATCGCACACCAGCACAAGTTTGAAAGAAACACCACCTCTGCCGATCACACTGACGAAAAGCGCTTTTTGGCTGCCAAGGCACCGGGGCAATCCACTCCACTTTCCATTGCTTCCAATCTACAAAATACATACAAAGGTCCTTCAGACCTTCTCAACATACTCAAACCTGCTACGCTAAATGGTAATCTCAATGAGGTCTCCAGCACAGTGTCAGACGCAAACATAATGGGTTATGAGGATAAGACGAGCAAGAAACGGCGTAACATTCACACCGCCAAAGTCGATGGAGAAGACAAACTAGCGTTTGACCCCCGTACTCAACAAATCAAACCCGTATCGAGCAAAACATTGGCAAAAGATTGCCAGAGATCAACGGGAAGCGAAATCCAGGACAGCGAGCATCTGAAAAACAGCCTTTGTTTATTCGAACAGAGAAACTTTCGGAGAGAGACGTCACAAAGCAAGATGATTCAGAATAGCTTACTGACTCCTGAAAAGGCAGGGATGAGCTTTTCTCTGGGTGATATAAGAAAAACCCACGGGTTTATTCCAGAGTTCCCTGTCACAGACCTTCCAGGGGTCAGCCGAGAGGTCACCGAGCGGGACCTCATCAGGATGAGCAGTCAGCGGTGGCATGGGGTGAACGGCTGCTACGATAACGGGAATAACTGGTATGACTGGACTCAGTCCTTCACCCTGGATCCATACGGAGATGGGAGTAAACTTAAGATTCTGCCTTATGTTGGAATAGATTACAGACTTTGAGTTTTCA
>XM_043251248.1
TGGGAGTTTATTAATTTGCCTGCATGGACACGGGTCGTTGCGCTCAGATGGGGTGGCAGTAAAGTGGTTTCGTATGCGAAACGTCTGCATTTTTGCAGAGTTTTGTAAGTAGTACGTGTTCCTGATATAGCAAATCTTTCAGTGGATGTTTTTCAAAGACAATGAAAAGGGCTTCGTCGAGACCTCAACAACTCAAAGATCAGCTCCTTCAGGCCATCGATTCTCTAAATAATcagATACAGAACATGATGGCTTTTTTGGATGTGATATGCTGCCTGGAGAAGCACCCCATGACTAAAGAGGCTCTAATGGAAACCAGGCTTGGAAAGCTGATCAACGATGTGAGAAAAAGGTGCACGGATGAAGACCTTGTTAAACGTTTAAAAAGTCTTATACGCCGTTGGCAGAGGCTGGTGGAGGTAAATGAAGTCACAGCGAAAGAGCTCTCAAGCCCTGCAGACAATTCAACATCTGCTGAATGCGTTTCTGGATCAACACATACCCCTGTTGAAAATTACAGCAGAGCTCGTCTTCACAGCGCCACTGGAGAGAGGACTGAATTGTCCGAGGATTCTGTCCCAGCTAAAACCGTAAAATATCCaaataattttagaaaaagtaaaatacctATCCGTGCAATCAAACCATATTCCTCGTCCATCAAGCGTATATCTCTGTCCGATCATCATTCCCAAAATGCCAATGGTATCGCACACCAGCACAAGTTTGAAAGAAACACCACCTCTGCCGATCACACTGACGAAAAGCGCTTTTTGGCTGCCAAGGCACCGGGGCAATCCACTCCACTTTCCATTGCTTCCAATCTACAAAATACATACAAAGGTCCTTCAGACCTTCTCAACATACTCAAACCTGCTACGCTAAATGGTAATCTCAATGAGGTCTCCAGCACAGTGTCAGACGCAAACATAATGGGTTATGAGGATAAGACGAGCAAGAAACGGCGTAACATTCACACCGCCAAAGTCGATGGAGAAGACAAACTAGCGTTTGACCCCCGTACTCAACAAATCAAACCCGTATCGAGCAAAACATTGGCAAAAGATTGCCAGAGATCAACGGGAAGCGAAATCCAGGACAGCGAGCATCTGAAAAACAGCCTTTGTTTATTCGAACAGAGAAACTTTCGGAGAGAGACGTCACAAAGCAAGATGATTCAGAATAGCTTACTGACTCCTGAAAAGGCAGGGATGAGCTTTTCTCTGGGTGATATAAGAAAAACCCACGGGTTTATTCCAGAGTTCCCTGTCACAGACCTTCCAGGGGTCAGCCGAGAGGTCACCGAGCGGGACCTCATCAGGATGAGCAGTCAGCGGTGGCATGGGGTGAACGGCTGCTACGATAACGGGAATAACTGgtcagcgtgatttctgattggctgtttttgCAGTGTGGGCGGTCCTTGTGAGTGGGTGAGAGTAAGCATTGCTAGTATGAGAAAATAAGCTTCGGCTGTGATAAAAAGGGGGTGTGTTTCCATGGTAACCCGGCGGCCC

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251246.1 False 1474 mRNA 0.45 3 1950040 1953097
XM_043251247.1 False 1469 mRNA 0.45 3 1950040 1953095
XM_043251248.1 True 1517 mRNA 0.46 4 1949640 1953102

Neighbor

gene id symbol gene type direction distance location
slc35e1 slc35e1,LOC107750991,LOC107699363,LOC107592850,LOC107752163,LOC107654177,LOC107550533 coding downstream 7259 1937369 ~ 1942381 (-)
si:ch73-40i7.2 LOC107751000,LOC107592879,LOC107699362,LOC107752169 coding downstream 13336 1926269 ~ 1936304 (-)
pex11g pex11g coding downstream 26049 1920831 ~ 1923591 (-)
si:ch73-40i7.5 LOC107592849,LOC107750992,LOC107752160,LOC107697644,LOC107550530 coding downstream 28899 1914161 ~ 1920741 (-)
abca7 LOC107550538,LOC107697642 coding downstream 35789 1889679 ~ 1913851 (-)
cse1l cse1l,LOC107699361,LOC107750990,LOC107654178,LOC107752166 coding upstream 448 1953550 ~ 1963610 (-)
ptprga ptprga,ptprg,LOC107699324,LOC107752167,LOC107654175,LOC106583020 coding upstream 13391 1966493 ~ 2175928 (-)
trnap-cgg_2 NA coding upstream 748106 2701208 ~ 2701279 (-)
trnaf-gaa_2 NA coding upstream 748706 2701808 ~ 2701885 (-)
trnap-ugg_6 NA coding upstream 749694 2702796 ~ 2702867 (-)
G78726 NA non-coding downstream 25358 1923705 ~ 1924282 (-)
LOC122354127 NA non-coding downstream 208622 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 435737 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 437408 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 438114 1510981 ~ 1511526 (-)
LOC122354525 NA non-coding upstream 530568 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 534382 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 743307 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 744126 2697228 ~ 2697472 (-)
G78773 NA non-coding upstream 747411 2700513 ~ 2700729 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 233511 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 252853 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 689550 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 974853 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1155504 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 860250 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 866486 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 884181 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 885139 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 885745 2838847 ~ 2838919 (-)

Expression


Co-expression Network