cse1l (cse1l,LOC107699361,LOC107750990,LOC107654178,LOC107752166)


Basic Information

Item Value
gene id cse1l
gene name cse1l,LOC107699361,LOC107750990,LOC107654178,LOC107752166
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1953550 ~ 1963610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252529.1
GTGCGCAGCGCTCTGTGTCTCATTAGTGCGCATGCGCTCAGTCGTGACCGCGCACTTGTGTGAGACGTTTGAAACTTCTCGCCGGTGATTAGCACAGCACTTCAACCTACGGCTAACGCAATCATGGAGCTCAATGATGGAAATCTCCAAACCCTCACTGAGTATCTGCAGAAAACACTAAGCCCTGATCCAGCTGTAAGACGGCCAGCCGAGAAGTTTCTGGAATCGGTCGAGGGAAACCAGAACTACCCCATTTTACTGCTCACAGTACTAGAGAAGTCCCAAGACGAGGTGATCCGCGTGTGTTCGGCTGTCACCTTCAAGAACTACATCAAGAGGAACTGGCGCATAATTGAGGACGAGCCCAACAAGATCTCTGATCCTGACCGGACCGCTATCAAAGCCAACATTGTAAATTTGATGCTAACCAGCCCAgagcaaatacaaaaacagCTGAGTGATGCGATCAGTATCATCGGGCGAGAGGATTTCCCTCAGAAATGGCCGGATCTCCTGACTGAGATGGTGACTCGTTTTCAGAGCGGGGACTTCCACATCATCAATGGAGTCCTTCGCACGGCACACTccctttttaaaagATATCGCCATGAGTTTAAGTCTAATGAGCTGTGGTCAGAGATCAAGCTGGTACTGGACACTTTTGCACAGCCTCTAACTGAACTTTTCAAGGCTACGATTGATTTGTGTCAAACTCATGCGACAGATGTCAACGCCCTGAAAGTGCTCTTCTCTTCTCTAACGcttatttcaaaacttttctacAGCCTTAACTTCCAGGATCTGCCAGAGTTCTTTGAGGATAACATGGAGACTTGGATGACGAATTTTCATAACTTATTGACTTTAGATAACAAGTTGTTGCAAACAGATGATGAGGAGGAGGCCGGTCTGTTGGAGCTGTTGAAATCCCAAATCTGTGATAACGCTGCACTTTACGCTCAAAAATACGATGAAGAGTTCCAGCCTTACTTGCCTCGCTTTGTCACAGCTATCTGGAACCTGCTGGTCACAACTGGACAGGAAGTTAAATATGACTTGCTTGTGAGCAATGCTATCCAGTTTTTGGCGTCAGTGTGTGAGCGACCGCATTATAAGCATCTCTTTGAAGACCAGAATGTTCTCACCAGCATCTGTGAGAAGGTCATCGTGCCCAACATGGAGTTCAGAAGTGCAGATGAAGAGGCTTTTGAAGATAACGCAGAAGAGTACATCATCAGAGATCTTGAAGGCTCAGACATCGACACGAGACGCAGAGCAGCCTGTGACTTGGTGCGGGGTCTCTGTAAGTTCTTTGAGGGCCCGGTGACGGGCATCTTCTCTGGGTATGTGAACTCCATGCTGACAGAATACGCCAAGAACCCCGGGGTGAACTGGAAACACAAAGACGCTGCTATCTACCTGGTCACATCTCTTGCTTCAAAAGCGCAGACACAAAAGcACGGAATAACGCAAGCCAATGAGTTGGTGAACCTGTGTGAATTCTTTGTCAACCACATCCTAGTAGACCTGAAATCTCCCAATGTGAACGAGTTCCCAGTTTTGAAAGCAGATGCCATCAAGTATGTTATGACCTTCAGAAGTCAACTCCCTAAAGAGCAGCTGTTGGAGGCCGTTCCTCTCCTGGTGGCCCACCTGCAGGCGGAGAGCATCGTTCAGCACACCTATGCAGCACATGCACTTGAGAGACTCTTCACCATGAGAGGAGCCAACAACGCCACTCTGATTACTCCTACTGAAATAGCACCGTTCACAGAACAGTTACTCAACTATCTGTTCAAAGCTTTAGCCATCCCTGGCTCATCTGAGAACGAGTACATAATGAAAGCCATCATGAGGAGTTTCTCCCTCTTACAGGAAGCCATTGTGCCCTACATCCCCACTCTCATTGGCCAACTCACTCATAAGCTCCTCCTCGTCAGCAAGAATCCCAGTAAGCCGCATTTCAACCATTACCTGTTTGAGTCACTGTGCCTGTCCATCAGGATCACCTGCAAGGCTAATCGGGACACCGTGGGCAGCTTTGAAGAGGCCCTGTTTCCTGTGTTTACTGAGATCCTCCAAAATGACGTGCAGGAGTTTGTGCCGTACGTCTTCCAGGTGATGTCTCTGCTGCTGGAGATCCACAGCAGCTCCATCCCCTCCTCCTACATGGCCCTGTTCCCTCACCTCCTGCAACCCGTTCTGTGGGAACGTACAGGAAACATCCCTCCTTTAGTCCGGCTGCTGCAGGCCTATCTGGAGAAAGGAGCCAGCACCATCGCCAGCACAGCGGCTGACAAGATTCCTGGTCTTCTTGGAGTATTCCAGAAGCTCATTGCATCCAAGGCTAATGACCATCAAGGCTTCTATCTCCTCAACAGTATAGTGGAGCACATGCCTCCaGATTCAATCACCCAGTACAGGAAGCAGATCTTTATTCTGCTTTTCCAGAGGCTTCAGAGCTCCAAGACCACAAAATTTGTGAAAAGTTTCCTGGTCTTTATCAACCTTTATTGTGTGAAATATGGAGCAATTGCATTGCAGGAGATATTTGATGACATCCAGCCAAAGATGTTTGGCATGGTTGTGGAGAAGATCATAATTCCTGAGGTGCAGAAGGTCTCGGGGCAGGTGGAGAAGAAAATCTGCGCTGTTGGCATCACAAAGATCCTCACCGAGTGTCCTGCCATGATGGACACGGAGTACACCAAACTCTGGACTCCTTTGTTGCAGGCTCTGATTGGTCTGTTTGAGTTACCAGAAGACGATAGCATCCCAGACGATGAGCATTTCATAGACATAGAGGACACTCCGGGATACCAGACGGCTTTCTCACAGCTTGCTTTTGCAGGGAAGAAAGAGCATGATCCCATCGGAGATGCTGTCAACAATCCCAAAATCCTTTTAGCTCAGTCCTTACACAAACTCTCCACCGCCTGTCCCGGGAGGGTTCCCTCCATGCTGAGCACCAGTCTGCCGGCAGAAGCACTTCAGTTCCTGCAGGGTTACCTTCAGGCTGCCACTGTACAGCTGGTGTAGCCACACGCCCAGACTCCATATCACCCAGAAAGGGGACCTCTGATGCTCTCAAGACACCTAAACCGATCCAACCAATAAAGAGACGACCAGTGGACTCAACATGAGTGGAGACTCACCGCCCAGTGACGCGTGGCCAGACAGAAGGGATTTTTAAGGgattgttttaatgaattatgtGACGAATGGGAAAGTGCTTGGGTAGAGGGGTGCTGATCATCTCACTGGGTGGCCTCTGCTGGTGTTGTCCTCGATCGTATATTATTTGGAGTCCATTCAATATGTTCTCTTACCGTTTCGTTAGGCGTCTCGCTCAACCATACATTCGGCAGTATTTTGAAATGTCGCCTTTTACAAATATTGAACAGCACTTGGCAGACATTTGATGGCATCTTTGAAATCGAGGAGGAAAGCGTTTTTTCCGGTTATTCTTTCCTGTAGTTTTGGagatgtttttactgtataaacgAGTTGTTTTGCTAAGCAGAAAAATTTGTCATGTCTCATGTTGCATGTTATTCACAATGTTTTGTCTTCACGTCTTAGTTTTGCTGCTCTagttgttaataaataaaattaagcactTGTTTAA

Function

symbol description
cse1l Predicted to enable nuclear export signal receptor activity. Acts upstream of or within body fluid secretion. Predicted to be located in several cellular components, including apical plasma membrane; basal plasma membrane; and lateral plasma membrane. Predicted to be active in cytosol and nuclear envelope. Is expressed in brain; digestive system; endoderm; and retina. Orthologous to human CSE1L (chromosome segregation 1 like).

NR:

description
PREDICTED: exportin-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007589 body fluid secretion biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18423 CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252529.1 True 3628 mRNA 0.48 25 1953550 1963610

Neighbor

gene id symbol gene type direction distance location
LOC122353511 NA coding downstream 448 1949640 ~ 1953102 (-)
slc35e1 slc35e1,LOC107750991,LOC107699363,LOC107592850,LOC107752163,LOC107654177,LOC107550533 coding downstream 11169 1937369 ~ 1942381 (-)
si:ch73-40i7.2 LOC107751000,LOC107592879,LOC107699362,LOC107752169 coding downstream 17246 1926269 ~ 1936304 (-)
pex11g pex11g coding downstream 29959 1920831 ~ 1923591 (-)
si:ch73-40i7.5 LOC107592849,LOC107750992,LOC107752160,LOC107697644,LOC107550530 coding downstream 32809 1914161 ~ 1920741 (-)
ptprga ptprga,ptprg,LOC107699324,LOC107752167,LOC107654175,LOC106583020 coding upstream 2883 1966493 ~ 2175928 (-)
trnap-cgg_2 NA coding upstream 737598 2701208 ~ 2701279 (-)
trnaf-gaa_2 NA coding upstream 738198 2701808 ~ 2701885 (-)
trnap-ugg_6 NA coding upstream 739186 2702796 ~ 2702867 (-)
trnaf-gaa_3 NA coding upstream 739785 2703395 ~ 2703472 (-)
G78726 NA non-coding downstream 29268 1923705 ~ 1924282 (-)
LOC122354127 NA non-coding downstream 212532 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 439647 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 441318 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 442024 1510981 ~ 1511526 (-)
LOC122354525 NA non-coding upstream 520060 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 523874 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 732799 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 733618 2697228 ~ 2697472 (-)
G78773 NA non-coding upstream 736903 2700513 ~ 2700729 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 237421 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 256763 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 693460 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 978763 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1159414 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 849742 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 855978 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 873673 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 874631 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 875237 2838847 ~ 2838919 (-)

Expression


Co-expression Network