ccdc50b (LOC107592910,LOC107756624,LOC107751234,LOC107654367,LOC107654434)


Basic Information

Item Value
gene id ccdc50b
gene name LOC107592910,LOC107756624,LOC107751234,LOC107654367,LOC107654434
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 5916996 ~ 5931484 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251459.1
gtagcagccaaactcaaactgtcattgtgtGTGAGGGAAAATGTCCTAAACATGAAGAACGGAGGACATCCAGAGAGGACGATCTTGTGATAGACTGCAGTCACACggattttattgtttgtcacgtctgattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacgcgaCTTCACGGATCTGCGCGTCTGTGGTGACAGAAGAGGGATTCTTCAGAACATCATGAGGCTGTGAGCTCACTGTGGAATCAGTCATGGCAGAATCCGACATAGACAAATCTCACCTGCCCGGTGTTTGTGATGTGTGCCAGTGTTTCTCCGTGTTGGAGGACGGTGCGTTGGCTCACAGTCTTCAAGAGCAGGAAATTGAGCAGTTCTACAGCACCAACATCCAGAAGAACCAGGCGGTGCAGAGCGACGTTCGTTTGGCCCGGAGGctgcaggaggaagaggagcaacGAGCGAACCTCCGCCAGGACCTTCAGCAGCTagaggaggaggactGCAGATATGCTCAGATGATCCAGGAGGAGCTCCAAAGGTGTACGGAGGAGACCAGGAGGCGAGAGATAGAGGACGAGGAAATCGCCAAACAGCtacaggaagaagaagaaatggaAATGAGACGGCAGAGAGTTGCTGCCGGTTACAGTGACAATGACTGCGTTTCTCCACTCTGTGAAGGTTTGGAAGTCTGGGAGCAGGTGCTTCAGGACGCCGAGCTGGCTCGTAGACTTCAGGAGGAAGAGGATATGCTGCCTCACAGAGAACAGTTTCCTCAGAGCTCCGGATCAGAGGTGGATTTCATTGCGGCTCAAGTAGCCCAAGATGAGGAGATCGCCCACTACATGCAGCGCCATCAGAGAAGAGTCAAAAACCGGCCACAAGACCTAGAGATCCAGACCAGACCTGCTGAACCAAGAGAGGAAGGAAATACCACAACCAGGAAGTCTCTTCAGATGTTGCGCGAGAGGCTGAACTCAGATGGCCTGCACTCACCTGTGGAAGAGGAAGACTATAGCCATCAGCCTATTGAAAGCCATCTAGCAAGCCCATCGTGCACTGCACTTCGAAACCAACACATACACAACATTGCAGAAGAACTGGACCCAACGTTCAAGGCTAGGAAGCGCGAGAGCCACATTACTACAAGCCCTCAACCAGCAGGTCTATGTTTGGCCCCTCGTAACCCCCACAGTATCTTTTATGACTATTTACCAGAAGCCACCTTCATACCACCAACTAAAAGGCAGAGCGACAAAGCAGGACGCCACAAAGCCAAAGACAAGAAAGAGAACTGCAAACAGCAGTGATCACGTGACTAACATAGTCATCTGAGTGTCTAAACAAGTGTTATAGAATCCATTTTATGGACACAGATTAAACTGAGTAACAATTCATGGTTTCATCATGTTGTTGTATGGCATGACAAAACATGACGGCCACAAGGGAGATAACATAATTTAAGAAAAGCACttctaaattaaatacacaaaggcAAGTTCCTTCATTATGCTATTTAAAACCTCGAAAGGCAGGGTGGGTGATTTCAGAGAGGCTAGCAAATCACTTTCCAAAGCCAAGCCTTCTCAAAAAACACATGATGCGATGAGAGATGATATTTGTGGAGGGTTCGATGCAATGATGATAAGAATGTGATTGGAAGAACTTTTTATGCTCTACAGACAATATAAGTACCTATaaataagtgctgtcaaacgattaatcacaattaactgcatccaaaataaaggttttggtttacatatatatatatatatatatatatatatatatatatatata
>XM_043251460.1
gtagcagccaaactcaaactgtcattgtgtGTGAGGGAAAATGTCCTAAACATGAAGAACGGAGGACATCCAGAGAGGACGATCTTGTGATAGACTGCAGTCACACggattttattgtttgtcacgtctgattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacgcgaCTTCACGGATCTGCGCGTCTGTGGTGACAGAAGAGGGATTCTTCAGAACATCATGAGGCTGTGAGCTCACTGTGGAATCAGTCATGGCAGAATCCGACATAGACAAATCTCACCTGCCCGGTGTTTGTGATGTGTGCCAGTGTTTCTCCGTGTTGGAGGACGGTGCGTTGGCTCACAGTCTTCAAGAGCAGGAAATTGAGCAGTTCTACAGCACCAACATCCAGAAGAACCAGGCGGTGCAGAGCGACGTTCGTTTGGCCCGGAGGctgcaggaggaagaggagcaacGAGCGAACCTCCGCCAGGACCTTCAGCAGCTagaggaggaggactGCAGATATGCTCAGATGATCCAGGAGGAGCTCCAAAGGTGTACGGAGGAGACCAGGAGGCGAGAGATAGAGGACGAGGAAATCGCCAAACAGCtacaggaagaagaagaaatggaAATGAGACGGCAGAGAGTTGCTGCCGGTTACAGTGACAATGACTGCGTTTCTCCACTCTGTGAAGGTTTGGAAGTCTGGGAGCAGGTGCTTCAGGACGCCGAGCTGGCTCGTAGACTTCAGGAGGAAGAGGATATGCTGCCTCACAGAGAACAGTTTCCTCAGAGCTCCGGATCAGAGGTGGATTTCATTGCGGCTCAAGTAGCCCAAGATGAGGAGATCGCCCACTACATGCAGCGCCATCAGAGAAGAGTCAAAAACCGGCCACAAGACCTAGAGATCCAGACCAGACCTGCTGAACCAAGAGAGGAAGGAAATACCACAACCAGGAAGTCTCTTCAGATGTTGCGCGAGAGGCTGAACTCAGATGGCCTGCACTCACCTGTGGAAGAGGAAGACTATAGCCATCAGCCTATTGAAAGCCATCTAGCAAGCCCATCGTGCACTGCACTTCGAAACCAACACATACACAACATTGCAGAAGAACTGGACCCAACGTTCAAGGCTAGGAAGCGCGAGAGCCACATTACTACAAGCCCTCAACCAGGTCTATGTTTGGCCCCTCGTAACCCCCACAGTATCTTTTATGACTATTTACCAGAAGCCACCTTCATACCACCAACTAAAAGGCAGAGCGACAAAGCAGGACGCCACAAAGCCAAAGACAAGAAAGAGAACTGCAAACAGCAGTGATCACGTGACTAACATAGTCATCTGAGTGTCTAAACAAGTGTTATAGAATCCATTTTATGGACACAGATTAAACTGAGTAACAATTCATGGTTTCATCATGTTGTTGTATGGCATGACAAAACATGACGGCCACAAGGGAGATAACATAATTTAAGAAAAGCACttctaaattaaatacacaaaggcAAGTTCCTTCATTATGCTATTTAAAACCTCGAAAGGCAGGGTGGGTGATTTCAGAGAGGCTAGCAAATCACTTTCCAAAGCCAAGCCTTCTCAAAAAACACATGATGCGATGAGAGATGATATTTGTGGAGGGTTCGATGCAATGATGATAAGAATGTGATTGGAAGAACTTTTTATGCTCTACAGACAATATAAGTACCTATaaataagtgctgtcaaacgattaatcacaattaactgcatccaaaataaaggttttggtttacatatatatatatatatatatatatatatatatatatatatatat
>XM_043251461.1
gtagcagccaaactcaaactgtcattgtgtGTGAGGGAAAATGTCCTAAACATGAAGAACGGAGGACATCCAGAGAGGACGATCTTGTGATAGACTGCAGTCACACggattttattgtttgtcacgtctgattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacgcgaCTTCACGGATCTGCGCGTCTGTGGTGACAGAAGAGGGATTCTTCAGAACATCATGAGGCTGTGAGCTCACTGTGGAATCAGTCATGGCAGAATCCGACATAGACAAATCTCACCTGCCCGGTGTTTGTGATGTGTGCCAGTGTTTCTCCGTGTTGGAGGACGGTGCGTTGGCTCACAGTCTTCAAGAGCAGGAAATTGAGCAGTTCTACAGCACCAACATCCAGAAGAACCAGGCGGTGCAGAGCGACGTTCGTTTGGCCCGGAGGctgcaggaggaagaggagcaacGAGCGAACCTCCGCCAGGACCTTCAGCAGCTagaggaggaggactGCAGATATGCTCAGATGATCCAGGAGGAGCTCCAAAGGTGTACGGAGGAGACCAGGAGGCGAGAGATAGAGGACGAGGAAATCGCCAAACAGCtacaggaagaagaagaaatggaAATGAGACGGCAGAGAGTTGCTGCCGGTTACAGTGACAATGACTGCGTTTCTCCACTCTGTGAAGGTTTGGAAGTCTGGGAGCAGGTGCTTCAGGACGCCGAGCTGGCTCGTAGACTTCAGGAGGAAGAGGATATGCTGCCTCACAGAGAATTTCCTCAGAGCTCCGGATCAGAGGTGGATTTCATTGCGGCTCAAGTAGCCCAAGATGAGGAGATCGCCCACTACATGCAGCGCCATCAGAGAAGAGTCAAAAACCGGCCACAAGACCTAGAGATCCAGACCAGACCTGCTGAACCAAGAGAGGAAGGAAATACCACAACCAGGAAGTCTCTTCAGATGTTGCGCGAGAGGCTGAACTCAGATGGCCTGCACTCACCTGTGGAAGAGGAAGACTATAGCCATCAGCCTATTGAAAGCCATCTAGCAAGCCCATCGTGCACTGCACTTCGAAACCAACACATACACAACATTGCAGAAGAACTGGACCCAACGTTCAAGGCTAGGAAGCGCGAGAGCCACATTACTACAAGCCCTCAACCAGCAGGTCTATGTTTGGCCCCTCGTAACCCCCACAGTATCTTTTATGACTATTTACCAGAAGCCACCTTCATACCACCAACTAAAAGGCAGAGCGACAAAGCAGGACGCCACAAAGCCAAAGACAAGAAAGAGAACTGCAAACAGCAGTGATCACGTGACTAACATAGTCATCTGAGTGTCTAAACAAGTGTTATAGAATCCATTTTATGGACACAGATTAAACTGAGTAACAATTCATGGTTTCATCATGTTGTTGTATGGCATGACAAAACATGACGGCCACAAGGGAGATAACATAATTTAAGAAAAGCACttctaaattaaatacacaaaggcAAGTTCCTTCATTATGCTATTTAAAACCTCGAAAGGCAGGGTGGGTGATTTCAGAGAGGCTAGCAAATCACTTTCCAAAGCCAAGCCTTCTCAAAAAACACATGATGCGATGAGAGATGATATTTGTGGAGGGTTCGATGCAATGATGATAAGAATGTGATTGGAAGAACTTTTTATGCTCTACAGACAATATAAGTACCTATaaataagtgctgtcaaacgattaatcacaattaactgcatccaaaataaaggttttggtttacatatatatatatatatatatatatatatatatatatatata
>XM_043251463.1
gtagcagccaaactcaaactgtcattgtgtGTGAGGGAAAATGTCCTAAACATGAAGAACGGAGGACATCCAGAGAGGACGATCTTGTGATAGACTGCAGTCACACggattttattgtttgtcacgtctgattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacgcgaCTTCACGGATCTGCGCGTCTGTGGTGACAGAAGAGGGATTCTTCAGAACATCATGAGGCTGTGAGCTCACTGTGGAATCAGTCATGGCAGAATCCGACATAGACAAATCTCACCTGCCCGGTGTTTGTGATGTGTGCCAGTGTTTCTCCGTGTTGGAGGACGGTGCGTTGGCTCACAGTCTTCAAGAGCAGGAAATTGAGCAGTTCTACAGCACCAACATCCAGAAGAACCAGGCGGTGCAGAGCGACGTTCGTTTGGCCCGGAGGctgcaggaggaagaggagcaacGAGCGAACCTCCGCCAGGACCTTCAGCAGCTagaggaggaggactGCAGATATGCTCAGATGATCCAGGAGGAGCTCCAAAGGTGTACGGAGGAGACCAGGAGGCGAGAGATAGAGGACGAGGAAATCGCCAAACAGCtacaggaagaagaagaaatggaAATGAGACGGCAGAGAGTTGCTGCCGGTTACAGTGACAATGACTGCGTTTCTCCACTCTGTGAAGGTTTGGAAGTCTGGGAGCAGGTGCTTCAGGACGCCGAGCTGGCTCGTAGACTTCAGGAGGAAGAGGATATGCTGCCTCACAGAGAACAGTTTCCTCAGAGCTCCGGATCAGAGGTGGATTTCATTGCGGCTCAAGTAGCCCAAGATGAGGAGATCGCCCACTACATGCAGCGCCATCAGAGAAGAGTCAAAAACCGGCCACAAGACCTAGAGATCCAGACCAGACCTGCTGAACCAAGAGAGGAAGGAAATACCACAACCAGGAAGATGTTGCGCGAGAGGCTGAACTCAGATGGCCTGCACTCACCTGTGGAAGAGGAAGACTATAGCCATCAGCCTATTGAAAGCCATCTAGCAAGCCCATCGTGCACTGCACTTCGAAACCAACACATACACAACATTGCAGAAGAACTGGACCCAACGTTCAAGGCTAGGAAGCGCGAGAGCCACATTACTACAAGCCCTCAACCAGCAGGTCTATGTTTGGCCCCTCGTAACCCCCACAGTATCTTTTATGACTATTTACCAGAAGCCACCTTCATACCACCAACTAAAAGGCAGAGCGACAAAGCAGGACGCCACAAAGCCAAAGACAAGAAAGAGAACTGCAAACAGCAGTGATCACGTGACTAACATAGTCATCTGAGTGTCTAAACAAGTGTTATAGAATCCATTTTATGGACACAGATTAAACTGAGTAACAATTCATGGTTTCATCATGTTGTTGTATGGCATGACAAAACATGACGGCCACAAGGGAGATAACATAATTTAAGAAAAGCACttctaaattaaatacacaaaggcAAGTTCCTTCATTATGCTATTTAAAACCTCGAAAGGCAGGGTGGGTGATTTCAGAGAGGCTAGCAAATCACTTTCCAAAGCCAAGCCTTCTCAAAAAACACATGATGCGATGAGAGATGATATTTGTGGAGGGTTCGATGCAATGATGATAAGAATGTGATTGGAAGAACTTTTTATGCTCTACAGACAATATAAGTACCTATaaataagtgctgtcaaacgattaatcacaattaactgcatccaaaataaaggttttggtttacatatatatatatatatatatatatatatatatatatatatatat
>XM_043251464.1
gtagcagccaaactcaaactgtcattgtgtGTGAGGGAAAATGTCCTAAACATGAAGAACGGAGGACATCCAGAGAGGACGATCTTGTGATAGACTGCAGTCACACggattttattgtttgtcacgtctgattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacgcgaCTTCACGGATCTGCGCGTCTGTGGTGACAGAAGAGGGATTCTTCAGAACATCATGAGGCTGTGAGCTCACTGTGGAATCAGTCATGGCAGAATCCGACATAGACAAATCTCACCTGCCCGGTGTTTGTGATGTGTGCCAGTGTTTCTCCGTGTTGGAGGACGGTGCGTTGGCTCACAGTCTTCAAGAGCAGGAAATTGAGCAGTTCTACAGCACCAACATCCAGAAGAACCAGGCGGTGCAGAGCGACGTTCGTTTGGCCCGGAGGctgcaggaggaagaggagcaacGAGCGAACCTCCGCCAGGACCTTCAGCAGCTagaggaggaggactGCAGATATGCTCAGATGATCCAGGAGGAGCTCCAAAGGTGTACGGAGGAGACCAGGAGGCGAGAGATAGAGGACGAGGAAATCGCCAAACAGCtacaggaagaagaagaaatggaAATGAGACGGCAGAGAGTTGCTGCCGGTTACAGTGACAATGACTGCGTTTCTCCACTCTGTGAAGGTTTGGAAGTCTGGGAGCAGGTGCTTCAGGACGCCGAGCTGGCTCGTAGACTTCAGGAGGAAGAGGATATGCTGCCTCACAGAGAACAGTTTCCTCAGAGCTCCGGATCAGAGGTGGATTTCATTGCGGCTCAAGTAGCCCAAGATGAGGAGATCGCCCACTACATGCAGCGCCATCAGAGAAGAGTCAAAAACCGGCCACAAGACCTAGAGATCCAGACCAGACCTGCTGAACCAAGAGAGGAAGGAAATACCACAACCAGGAAGTCTCTTCAGATGTTGCGCGAGAGGCTGAACTCAGATGGCCTGCACTCACCTGTGGAAGAGGAAGACTATAGCCATCAGCCTATTGAAAGCCATCTAGCAAGCCCATCGTGCACTGCACTTCGAAACCAACACATACACAACATTGCAGAAGAACTGGACCCAACGTTCAAGGCTAGGAAGCGCGAGAGCCACATTACTACAAGCCCTCAACCAGAAGCCACCTTCATACCACCAACTAAAAGGCAGAGCGACAAAGCAGGACGCCACAAAGCCAAAGACAAGAAAGAGAACTGCAAACAGCAGTGATCACGTGACTAACATAGTCATCTGAGTGTCTAAACAAGTGTTATAGAATCCATTTTATGGACACAGATTAAACTGAGTAACAATTCATGGTTTCATCATGTTGTTGTATGGCATGACAAAACATGACGGCCACAAGGGAGATAACATAATTTAAGAAAAGCACttctaaattaaatacacaaaggcAAGTTCCTTCATTATGCTATTTAAAACCTCGAAAGGCAGGGTGGGTGATTTCAGAGAGGCTAGCAAATCACTTTCCAAAGCCAAGCCTTCTCAAAAAACACATGATGCGATGAGAGATGATATTTGTGGAGGGTTCGATGCAATGATGATAAGAATGTGATTGGAAGAACTTTTTATGCTCTACAGACAATATAAGTACCTATaaataagtgctgtcaaacgattaatcacaattaactgcatccaaaataaaggttttggtttacatatatatatatatatatatatatatatatatatatatatatat

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 50-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251459.1 False 1824 mRNA 0.46 12 5916999 5931484
XM_043251460.1 True 1824 mRNA 0.46 12 5916996 5931484
XM_043251461.1 False 1821 mRNA 0.46 12 5916999 5931484
XM_043251463.1 False 1818 mRNA 0.46 12 5916996 5931484
XM_043251464.1 False 1770 mRNA 0.46 12 5916996 5931484

Neighbor

gene id symbol gene type direction distance location
si:dkey-264d12.5 LOC107592908,LOC107756646,LOC107654411,LOC107654359 coding downstream 20781 5887765 ~ 5896215 (-)
LOC122353621 LOC107756649,LOC107592864,LOC107654397 coding downstream 48921 5861347 ~ 5868075 (-)
slc45a1 slc45a1,LOC107702000,LOC107654425 coding downstream 191622 5711807 ~ 5725374 (-)
errfi1a errfi1,LOC107701998,LOC107756659,LOC107592857,LOC107736087,LOC107654423,LOC107579142 coding downstream 272975 5636129 ~ 5644021 (-)
pax7a pax7a,pax7,LOC107582416 coding downstream 369981 5492751 ~ 5547015 (-)
per3 per3,LOC107751173,LOC107756610,LOC107582444 coding upstream 887048 6818532 ~ 6838832 (-)
camta1b LOC107751174,LOC107654393,LOC107756644,LOC107654440,LOC107582404 coding upstream 917505 6848989 ~ 7121128 (-)
cdc42 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 1341358 7272842 ~ 7286099 (-)
c11h1orf50 zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182 coding upstream 1359126 7290610 ~ 7294450 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding upstream 1557799 7489283 ~ 7495714 (-)
G79530 NA non-coding downstream 58754 5857965 ~ 5858242 (-)
G79490 LOC107592861,LOC107702006,LOC107756656,LOC107582474,LOC107712957,LOC107654430 non-coding downstream 122766 5792970 ~ 5794230 (-)
G79472 fam213b,LOC107756615,LOC107702003,LOC107592888,LOC107582414,LOC107712975,LOC107654427 non-coding downstream 187938 5727444 ~ 5729058 (-)
G79454 NA non-coding downstream 206289 5708994 ~ 5710707 (-)
G79361 NA non-coding downstream 676284 5239514 ~ 5240712 (-)
LOC122353630 NA non-coding upstream 3420 5934904 ~ 5936532 (-)
LOC122353631 NA non-coding upstream 5787 5937271 ~ 5941950 (-)
LOC122353632 NA non-coding upstream 142792 6074276 ~ 6074960 (-)
G79562 NA non-coding upstream 144279 6075763 ~ 6076391 (-)
G79570 NA non-coding upstream 262347 6193831 ~ 6194923 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other downstream 151856 5739016 ~ 5765140 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other downstream 1951205 3961981 ~ 3965791 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other downstream 2002361 3913248 ~ 3914635 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other downstream 2082073 3813505 ~ 3834923 (-)
G79003 NA other downstream 2375941 3540001 ~ 3541055 (-)
G79565 NA other upstream 164649 6096133 ~ 6096480 (-)
vamp3 vamp3 other upstream 882141 6813625 ~ 6847790 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other upstream 1200094 7131578 ~ 7141236 (-)
LOC122354641 svbp other upstream 1221981 7153465 ~ 7155275 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other upstream 1436888 7368372 ~ 7436471 (-)

Expression


Co-expression Network