cldn19 (cldn19,LOC107582397,LOC107751184,LOC107565733,LOC107654447)


Basic Information

Item Value
gene id cldn19
gene name cldn19,LOC107582397,LOC107751184,LOC107565733,LOC107654447
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7316449 ~ 7327237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252524.1
tttttttccccccattccCGCTGCTCTGCCCCCTGAGCACCATCCAGACGCACTGGTGTGTGACAAGAACAGCTATGCAGACAGTAAAGCAGCACTCAACCACATCCTGACGGCATCCTGGGCATCTCAAACGCTCTTTCCACAGGCTCCAGAAGTGGGGTACCTTCAGAGAGGAGACTTGAAGGACTCAGTTTTAGACAGAATCAGGGGATGTCACAGGAAGCCTCCAAATGAGAGATACTGAAGCGAACGAGAGTTACAAAGGGATACAACGAGTGACCGAAGAGTTGGCGAGAATCAGACAGACTTTGACTGCTCACCTCGATTCGTTCGACTCATTCTGAGCGAGGTGGATTTCTTTACACGTTCTTGAGGGAATTGCAGGTGGCTTCCTGACTGGAGAAATTCGCTGAACTCTAATTCTACTCTGAAACCGAAGTTTGAAAAGGACAATTATGGCAAACTCTGGGTTTCAGCTTCTGGGCTATTTTCTCGCTCTGGGTGGATGGATTGGCATCATCTCCACTACGGTGCTGCCCCAATGGAAGCAGTCCTCTTATGCAGGGGATGCCATCATTATGGCCGTGGGCTTGTATGAAGGCCTGTGGATGTCCTGTGCATCTCAGAGTACGGGCCAGGTGCAGTGCAAGATCTTTGACTCCTTGCTCTCGCTGGATGtccACATTCAGACGTGTCGAGCTCTGATGGTGATCTCAGTGCTGATGGGATTCATCGCTATCATTGTGAGCGTGGTGGGGATGAAATGCACAAAGGTGGGTGACAACAACCCATCCACCAAGAGCAAGATCGCCATCTCTGGAGGGAGTCTGTTCCTGCTCTCAGGTGTGTGCACGCTGGTGGCTGTGTCATGGTACGCCACACAGGTCTCCTACCATTTCTTCGATCCGAATACGCCAGTTAATGCCAGGTATGAGTTTGGCCCCGCCCTCTTTGTGGGGTGGGCGGCTGCCATCCTGATGATGCTGGGCGGCTCGTTCCTCTGCTGCTCCTGCGTTAACGAGGACAGAAGAGGACAGCAGTTCTACCGGCAATCTCAACCCTCTACAGCCAGGGAAGCAAATGTTAAAAGTTCTCCAGCAGAGAAAGGGGAGCAGTACTTGTAGTTTGGGAGAGGGCGACTTCGTGGGTCACAAGCTGTTAGATTTTGGCAACAGACAAGACACTCTCTTTTTcggtgaaaaacaaaaatcaactaaatacaaaaacaaaacagcaaagagCTCCAGTAGATCCCTGTTGTGCAGACAACGCAGGGGTTCGTAAAGCCAAGCAATGCATTTGTACTGTAGCGTAAAACAAACGATAAAAATTTGATAAGGAGTGAGCCACAACAGCGCTATCGCGAAACgaatatgtcttttttttttgttacagttgGAGTTATACTTGCCGAAAATCTATATCACTTATCTGGAGAGCATTGATTCAGGgtacattataatgcatttaaataattatgcaaaaCTTCGATATGCGCGGTGTAATATACTGTGTTTTGACTCACATATGTCTTTTAGTTCGCTAATAGTTTCTGTTCTTTCTTGGCTTATATATGAGATGGATCTTTTACCCATGGTaaaatcaattgttttttttttcttcttcttctgtttttttgtttttgttttgttcgtaAAATGTACGGTACGTAAACTTCGAGGGGTTTGTCGCGTTTgattttgctttaaaagaaaCCCACATGCGGCACAGATACAGTTAAATCTCTCTAGTGCACTTATGATTTGTCTTGGTGAATTGTATTCAACCTGCATTGAAAGGCACTATTTATCATAAATAATGTCTTTGAAGTGGTCACGGAGTCTGTATGTAGGTTGTCGTTAGgatttttttagttcatgttcCACCAGTTATGTTACCTAATATTCAAGTATGTATCATCTCATATGATGTATCGAgctttctgttcatctgttttaaaataaaataaactatacaaAGATA
>XM_043252525.1
ttttttccccccattccCGCTGCTCTGCCCCCTGAGCACCATCCAGACGCACTGGTGTGTGACAAGAACAGCTATGCAGACAGTAAAGCAGCACTCAACCACATCCTGACGGCATCCTGGGCATCTCAAACGCTCTTTCCACAGGCTCCAGAAGTGGGGTACCTTCAGAGAGGAGACTTGAAGGACTCAGTTTTAGACAGAATCAGGGGATGTCACAGGAAGCCTCCAAATGAGAGATACTGAAGCGAACGAGAGTTACAAAGGGATACAACGAGTGACCGAAGAGTTGGCGAGAATCAGACAGACTTTGACTGCTCACCTCGATTCGTTCGACTCATTCTGAGCGAGGTGGATTTCTTTACACGTTCTTGAGGGAATTGCAGGTGGCTTCCTGACTGGAGAAATTCGCTGAACTCTAATTCTACTCTGAAACCGAAGTTTGAAAAGGACAATTATGGCAAACTCTGGGTTTCAGCTTCTGGGCTATTTTCTCGCTCTGGGTGGATGGATTGGCATCATCTCCACTACGGTGCTGCCCCAATGGAAGCAGTCCTCTTATGCAGGGGATGCCATCATTATGGCCGTGGGCTTGTATGAAGGCCTGTGGATGTCCTGTGCATCTCAGAGTACGGGCCAGGTGCAGTGCAAGATCTTTGACTCCTTGCTCTCGCTGGATGtccACATTCAGACGTGTCGAGCTCTGATGGTGATCTCAGTGCTGATGGGATTCATCGCTATCATTGTGAGCGTGGTGGGGATGAAATGCACAAAGGTGGGTGACAACAACCCATCCACCAAGAGCAAGATCGCCATCTCTGGAGGGAGTCTGTTCCTGCTCTCAGGTGTGTGCACGCTGGTGGCTGTGTCATGGTACGCCACACAGGTCTCCTACCATTTCTTCGATCCGAATACGCCAGTTAATGCCAGGTATGAGTTTGGCCCCGCCCTCTTTGTGGGGTGGGCGGCTGCCATCCTGATGATGCTGGGCGGCTCGTTCCTCTGCTGCTCCTGCGTTAACGAGGACAGAAGAGGACAGCAGTTCTACCGGCAATCTCAACCCTCTACAGCCAGGGAGGATGAGTTGTTGAGTGAGACTAGTTTCCCTGACTGACCAACCCTCCCTGCCTTTACTCGAGGACTGTCCGAGCTCCACTCTCTGTTATCTGTGTCCTTCACTCCCACCTAGAATCCAAATTTGGACGCTTGTCTGTACGACTGGGCAAATGTCCCTTCTACACCCTACATACTTAAAATCTGTGTGCCTTTTTTCAACATCTGATCAATAAACGTGTTTGAAAAATCGTCACCCTCCCCGTATCTGTTGTGTGCGTGGCCTCCACCCCCAAACCCCTCTTTGTTCGTGACcccataaaacaaaaaaaaaatgtaaatacgtATCATTTTGTAGCATGTGCGTGAAAACACCCTACAAAGCATGGACTGTTGCATTGCAATACACCTGAAACGGTGGACCTGATCTCCGTTTTCTTTgtaacatgttttgtttttcttttaaattgcagAGCAAATGTTAAAAGTTCTCCAGCAGAGAAAGGGGAGCAGTACTTGTAGTTTGGGAGAGGGCGACTTCGTGGGTCACAAGCTGTTAGATTTTGGCAACAGACAAGACACTCTCTTTTTcggtgaaaaacaaaaatcaactaaatacaaaaacaaaacagcaaagagCTCCAGTAGATCCCTGTTGTGCAGACAACGCAGGGGTTCGTAAAGCCAAGCAATGCATTTGTACTGTAGCGTAAAACAAACGATAAAAATTTGATAAGGAGTGAGCCACAACAGCGCTATCGCGAAACgaatatgtcttttttttttgttacagttgGAGTTATACTTGCCGAAAATCTATATCACTTATCTGGAGAGCATTGATTCAGGgtacattataatgcatttaaataattatgcaaaaCTTCGATATGCGCGGTGTAATATACTGTGTTTTGACTCACATATGTCTTTTAGTTCGCTAATAGTTTCTGTTCTTTCTTGGCTTATATATGAGATGGATCTTTTACCCATGGTaaaatcaattgttttttttttcttcttcttctgtttttttgtttttgttttgttcgtaAAATGTACGGTACGTAAACTTCGAGGGGTTTGTCGCGTTTgattttgctttaaaagaaaCCCACATGCGGCACAGATACAGTTAAATCTCTCTAGTGCACTTATGATTTGTCTTGGTGAATTGTATTCAACCTGCATTGAAAGGCACTATTTATCATAAATAATGTCTTTGAAGTGGTCACGGAGTCTGTATGTAGGTTGTCGTTAGgatttttttagttcatgttcCACCAGTTATGTTACCTAATATTCAAGTATGTATCATCTCATATGATGTATCGAgctttctgttcatctgttttaaaataaaataaactatacaaAGATA

Function

symbol description
cldn19 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in renal hypomagnesemia 5 with ocular involvement. Orthologous to human CLDN19 (claudin 19).

NR:

description
PREDICTED: claudin-19 isoform X2

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252524.1 False 1983 mRNA 0.45 5 7316449 7327237
XM_043252525.1 True 2431 mRNA 0.45 5 7316450 7327237

Neighbor

gene id symbol gene type direction distance location
p3h1 p3h1,LOC107756620,LOC107751183,LOC107654416,LOC107582441 coding upstream 13289 7295280 ~ 7303160 (+)
ap5b1 ap5b1,LOC107756637,LOC107654386,LOC107654446,LOC107751181,LOC107565726,LOC107580479 coding upstream 26140 7286052 ~ 7290309 (+)
wnt4 wnt4a,wnt4,LOC107565731,LOC107654388,LOC107582399 coding upstream 53977 7250585 ~ 7262472 (+)
fbxo2 zgc:175088,LOC107756640,LOC107751236,LOC107654389 coding upstream 163276 7146636 ~ 7153173 (+)
LOC122353546 dnajc11,LOC107751176,LOC107654442,LOC107756609,LOC107592899 coding upstream 185006 7122380 ~ 7131443 (+)
LOC122354656 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448,LOC107751217 coding downstream 133755 7460992 ~ 7478381 (+)
LOC122354605 LOC107756631,LOC107654376,LOC107751186,LOC107654419,LOC107582394 coding downstream 386001 7713238 ~ 7718577 (+)
si:ch211-117k10.3 si:ch211-117k10.3,LOC107654380,LOC107573302,LOC107654420,LOC107751187,LOC107582464 coding downstream 392719 7719956 ~ 7726100 (+)
klhdc8a klhdc8a,LOC107743283,LOC107654360,LOC107581204,LOC107700004,LOC107582463 coding downstream 578049 7905286 ~ 7923424 (+)
slc41a1 slc41a1,LOC107654373,LOC107698497,LOC107751220,LOC108254937 coding downstream 605368 7932605 ~ 7957674 (+)
G79690 NA non-coding upstream 36029 7278412 ~ 7280420 (+)
G79689 NA non-coding upstream 40102 7265243 ~ 7276347 (+)
G79659 LOC107592898,LOC107751174,LOC107592897,LOC107654393 non-coding upstream 444835 6869252 ~ 6871614 (+)
G79639 LOC107654393,LOC107592868,LOC107751174,LOC107654440 non-coding upstream 457863 6848367 ~ 6858586 (+)
G79646 NA non-coding upstream 477490 6834238 ~ 6838959 (+)
G79707 NA non-coding downstream 22298 7349535 ~ 7372373 (+)
G79706 epha8,LOC107654448,LOC107751217,LOC107582396,LOC107654383,LOC107565732 non-coding downstream 45675 7372912 ~ 7375674 (+)
LOC122354645 NA non-coding downstream 158973 7486210 ~ 7498189 (+)
G79748 NA non-coding downstream 502716 7829953 ~ 7830311 (+)
G79813 NA non-coding downstream 546552 7873789 ~ 7880398 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 491904 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 1969617 5286439 ~ 5346832 (+)
samd13 samd13,LOC107592550 other upstream 2932470 4375839 ~ 4383979 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other upstream 2941061 4368425 ~ 4375388 (+)
adgrl2a adgrl2a,adgrl2 other upstream 3163858 4060929 ~ 4152591 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other downstream 400550 7727787 ~ 7741441 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other downstream 748182 8075419 ~ 8150569 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other downstream 953578 8280815 ~ 8282901 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other downstream 1274950 8602187 ~ 8604284 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 1491153 8818390 ~ 8819279 (+)

Expression


Co-expression Network