trnac-gca_88


Basic Information

Item Value
gene id trnac-gca_88
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1146537 ~ 1146608 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1559
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccggttcaagtccgggtgccccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1559 True 72 tRNA 0.58 1 1146537 1146608

Neighbor

gene id symbol gene type direction distance location
trnac-gca_87 NA coding downstream 1439 1145027 ~ 1145098 (-)
trnac-gca_86 NA coding downstream 2081 1144385 ~ 1144456 (-)
trnac-gca_85 NA coding downstream 3618 1142849 ~ 1142919 (-)
trnac-gca_84 NA coding downstream 3840 1142627 ~ 1142697 (-)
trnac-gca_83 NA coding downstream 5385 1141081 ~ 1141152 (-)
trnac-gca_89 NA coding upstream 149 1146757 ~ 1146828 (-)
trnac-gca_90 NA coding upstream 363 1146971 ~ 1147041 (-)
trnac-gca_91 NA coding upstream 790 1147398 ~ 1147470 (-)
trnas-gcu_15 NA coding upstream 1655 1148263 ~ 1148334 (-)
trnac-gca_92 NA coding upstream 2096 1148704 ~ 1148774 (-)
G78338 NA non-coding downstream 72081 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 93993 1050078 ~ 1052544 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 96601 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 122727 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 238963 905807 ~ 907574 (-)
G78354 NA non-coding upstream 21714 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 57268 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 65668 1212276 ~ 1213265 (-)
G78410 NA non-coding upstream 135124 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 140685 1287293 ~ 1298959 (-)
LOC122353728 NA other downstream 171750 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 352401 599107 ~ 794136 (-)
G78170 NA other downstream 690539 453134 ~ 455998 (-)
G78144 alas1 other downstream 697636 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 741126 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 70611 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 442096 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 558016 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1666744 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1672980 2819588 ~ 2830203 (-)

Expression


Co-expression Network