XLOC_006623 (sfr1)


Basic Information

Item Value
gene id XLOC_006623
gene name sfr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24742724 ~ 24745288 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012776
AATAACAACGACGCAACAAGGTCCCGGAAGTGACGACGAAACAAATGGCACCAGTTTCAAAACAGCTGTGTTCACTGACAACTTTAGAAATGGAAGATCATATTCGCACAGAACTGCTTTGGAGAGTACTAAATCACAAATGATAAAGTTATGTAGTCGTTTTTTTCTTTTCGTATCTTGTAAAACATGGAGACAACCCCGATAAAACCAACAGCAGCTGATGAAACTACGCCAAGCGCCGAGCAGTCTTCAAACAGGTCCAGTACTGCAAAGCCCATGAGTGCCTCGCTGAGGGAGAAGCTAAAAAGATCTCGACACTCGTTCAAGTCTCCCCTCAGTGTGGTAAAACGACTCAAAATAGAGGATGACACTGAGCCTCAGCCTTCACAGCAGGGAGAAGAAGAGAAACACGGTGTCAAAGACGACAGAGACTCTAACGTTACAGAGACTGATGTCAACAGGAATGACATGAAGCTGCAGAGAGACTCGAACCACACAGCTGAGCTCCCCAGTCAGCAATGCGAAGCGCTGAGAAAAGCGGTGAAGGAGAGAACAGAAACCTTGAGGAGATTAAAGATGGTCAAGATGTACAGGAAAAAGaaTGACTTGAATGAGTTGCAGAGGCTCACAGACAAATGGAGATCCTGTGCTCAGTCTGTGCTGTATGAACTACAGAGAGAACTGGCCACAGGTGGAAAACAAGCCAGTCTTTCACAACTTATTGACAGCTTTGGGATTAATGATAAACTACTGCACTTTGATAGGACAGAGGAAGACTTCACAGACACGTGAATACATTTCAGCAATTTTTATTCACAGTTCAAACAGATTGCAGCGAGCTTTGTTCATTAAAACGTTTGCGAAGAAAGATTGTCAATTGATTGAACTGTATAATAATTTATTGCACCTTtgtgtgttgtttattgtttagGTAAAGTTGTTGCGTTTTGTATGTAGAGTCAGTTGTAGTGCAGTTGCGAGAGAGACGGGAAGTTCTTCATGCGCAGTTTCTCCAGCTCCGCTCTCAGCAGGAGCAGCTCTTCAGACTGAGCTCTGGCGATGGCCAGCAGCTTCTTTCTCAGGAGGATGTCCTGGTAGTTCTTGTCTGACTCTGTTTCCTGGTTATCTTCCATTGCTGGAAAAAGAAAATGTTATCAAATTTTGTGAGCTGTTCAGGCTCCTATGCATTTTTAGCACCATTAATAAATATGGATAAACAGC

Function

symbol description
sfr1 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in double-strand break repair via homologous recombination and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Swi5-Sfr1 complex. Orthologous to human SFR1 (SWI5 dependent homologous recombination repair protein 1).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0032798 Swi5-Sfr1 complex cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-070410-27 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in double-strand break repair via homologous recombination and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of Swi5-Sfr1 complex. Orthologous to human SFR1 (SWI5 dependent homologous recombination repair protein 1).

Ensembl:

ensembl_id ENSDARG00000021974

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012776 True 1221 mRNA 0.43 3 24742724 24745288

Neighbor

gene id symbol gene type direction distance location
XLOC_006622 erlin1 coding downstream 25106 24701406 ~ 24717618 (-)
XLOC_006621 znf511 coding downstream 73466 24665334 ~ 24669258 (-)
XLOC_006619 NA coding downstream 119499 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 coding downstream 136097 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 coding downstream 154504 24585224 ~ 24588220 (-)
XLOC_006624 slka coding upstream 35900 24781188 ~ 24826607 (-)
XLOC_006625 AL929334.1 coding upstream 85449 24830737 ~ 24870285 (-)
XLOC_006626 kat6b coding upstream 125762 24871050 ~ 24880525 (-)
XLOC_006627 kat6b coding upstream 135984 24881272 ~ 24906307 (-)
XLOC_006628 adka coding upstream 172808 24918096 ~ 25199260 (-)
XLOC_006471 BX537274.2 misc downstream 14477819 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 23916499 825904 ~ 826225 (-)
XLOC_006617 NA non-coding downstream 164702 24577265 ~ 24578022 (-)
XLOC_006616 NA non-coding downstream 167978 24573086 ~ 24574746 (-)
XLOC_006629 NA non-coding upstream 464870 25210158 ~ 25284716 (-)
XLOC_006633 BX005252.1 non-coding upstream 785246 25530534 ~ 25530648 (-)
XLOC_006640 NA non-coding upstream 1031101 25776389 ~ 25778815 (-)
XLOC_006643 NA non-coding upstream 1101244 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 1264209 26009497 ~ 26703804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12489485_12490402 NA coding CI01000012 null 12489287 ~ 12490431 (+)