CI01000012_12489485_12490402


Basic Information

Item Value
gene id CI01000012_12489485_12490402
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12489287 ~ 12490431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12489485_12490402.mRNA
AAATAAATGGAACTCGCACCAATTTCAAAACATTAGCGTGCCCACTGATCTCTTTACAGCAGAAAGATCAGATTCACATAGAGTTGCTTCCGACTGAATTATTACACCAGCAAAACGGATATAATTATTCAGCCATTTTATTATGTTTATTATGTAGCCAGTTTCTCCTTTTCATAGCGATTTCATATGGTGTGAATCATGGAGACAACTCCGATAAAAGTGACACCAGCTAATGAAACTACGCCGAATACAGCCCAGTCTTCTTCAAGTAGGTCCAGTACAACCAAGACTTCACAACCGGGAGACACGAAGCACAGCGTGACTGACGAAAGAGAGACTGATACTGATGTCAATCGGAATGATATGAAGGAGCAAAGAGACTGTTCACATTACACAGCTGAGACTGACTCAATTCAGCATTGTGAAGAGCTAAGAAATGCAGTGAAGGAGAGATCAGAAACCTTGAGAAGATTAAAGATGGCCAAGATGTATAGAAAAAAGAATGACCTGACCCAGCTGCAGAGGCTCATAGACAAATGGAGATCCTGTGCTCAGTCTGTGCTGTATGAATTACAGAGTGAATTACCCACAGAGGGAAAACAAGCTAGTCTGTCTCAGCTTATAGACAACTTTGGGTTAGATGATAAAATACTGCACTTTGATAGAACAGAGGAAGACTTCACAGACACCTGAAACTCATTTTATTAGTTTTATTCACACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12489485_12490402.mRNA True 722 mRNA 0.40 3 12489287 12490431

Neighbor

gene id symbol gene type direction distance location
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding upstream 23255 12440074 ~ 12466032 (+)
CI01000012_12381049_12417489 KAT6B coding upstream 70590 12380192 ~ 12418697 (+)
CI01000012_12378120_12378419 NA coding upstream 110625 12378120 ~ 12378662 (+)
CI01000012_12292583_12371612 ADK, ADKA coding upstream 117675 12292583 ~ 12371612 (+)
CI01000012_12270454_12276521 NA coding upstream 212662 12270346 ~ 12276625 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding downstream 15038 12505469 ~ 12509316 (+)
CI01000012_12536242_12538668 NA coding downstream 45645 12536076 ~ 12538728 (+)
CI01000012_12585843_12587149 NA coding downstream 95412 12585843 ~ 12587209 (+)
CI01000012_12621489_12646263 NA coding downstream 130907 12621338 ~ 12646399 (+)
CI01000012_12653960_12664480 SLC1A4 coding downstream 163400 12653831 ~ 12665121 (+)
G76232 NA non-coding upstream 3039 12479640 ~ 12486248 (+)
G76329 NA non-coding upstream 51058 12438009 ~ 12438229 (+)
G76328 NA non-coding upstream 51372 12437694 ~ 12437915 (+)
G76244 NA non-coding upstream 51797 12437112 ~ 12437490 (+)
G76230 NA non-coding upstream 52962 12436031 ~ 12436325 (+)
G76332 NA non-coding downstream 2218 12492649 ~ 12492849 (+)
G76335 NA non-coding downstream 6404 12496835 ~ 12499657 (+)
G76340 NA non-coding downstream 10689 12501120 ~ 12501330 (+)
G76341 NA non-coding downstream 12781 12503212 ~ 12503530 (+)
G76239 NA non-coding downstream 26635 12517066 ~ 12523981 (+)
G75533 NA other upstream 1343548 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2265000 10223697 ~ 10236276 (+)
G73578 NA other upstream 4121660 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4681432 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6564982 5922385 ~ 5929186 (+)
G76385 NA other downstream 140324 12630755 ~ 12675666 (+)
G76374 NA other downstream 255100 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 525075 13029435 ~ 13038899 (+)
G76645 NA other downstream 1161428 13651859 ~ 13652234 (+)
G76656 NA other downstream 1213056 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006623 sfr1 coding NC_007124.7 CM002897.2 24742724 ~ 24745288 (-)