CI01000012_12621489_12646263


Basic Information

Item Value
gene id CI01000012_12621489_12646263
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12621338 ~ 12646399 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12621489_12646263.mRNA
GGATAAAAGGCCCTTGCTAGAGCCTAATTTTTTGTTCAATATATAGTAATTCACATCATAGGGAACTAAGAATTATAATGAGACACAACCAAAGAGAGAAGACCTTCACCACTACTGTGGCTTCTCGGTTCTCTTAGTTCTTTTACTCCATATGCTGGTCAGTTGCCTTTACCAGATTAACTGTTCAACCTGTACTTTGGCTCCTGACCTGGATATACTAACCACAGGAAGAGAACAGGAAGAGCCAGAAAGAATGAGGAAAAAGGGGAATATTGAGTTCTCCTCATCGGTACCGATAAAACTCTCGCAGCTGATGAGGAAGGTCGGCAGTGAGTTTGTGGAGAGAGAAAAGGACGGCAGACTATCCGCGAGCCCGGAGTCAGTCACTATGACCGACAATCGCCTTCGAAAGCGAATGACGTCGAAGAATGAAGCCACAGATGTCAGTAAGAACATCAAACACAGAAATATGAAAGGCACCAGAGTGCTTAGGATTGTGGGTAATGAAATGATTGGACGACCCTGGACCAAAGCCACTGCTGATACTCCCCTGAGCCAAGCCATTATGGACACATTGCTCAGCCTGGTCAATATGGCTGTTGGAGGAACACAGTGGAGTGATCTTTGCGAGAGACAGCCGGCTAACACTGGCATTGCTGCTGTTCCAGAGACACCCGATCTCTACAAGGCTCCCCAACCTGCTGGGGCCTTCGCTGCTACTGCAGATCATTTGAGAGGAAATACTCAAGAACACTGACTCAATATCAGCACTTTATTATAATGGCATTTAGATAACCGAACACAAAGTATAAGCAGTAGGTCTCAAGTGCTACTTGTAGGTGTCATGCATATTTTTTCTAAAAGTCTAAATGACTGGATCTCTCTTGACTTTA
>TU86980
TCTACTTCAAGTGGAGGAATAAATTGAAGCATCGGGATGGATCTTTGTTTTATTGTTGACAGTCGGTACCGATAAAACTCTCGCAGCTGATGAGGAAGGTCGGCAGTGAGTTTGTGGAGAGAGAAAAGGACGGCAGACTATCCGCGAGCCCGGAGTCAGTCACTATGACCGACAATCGCCTTCGAAAGCGAATGACGTCGAGTGAGACTTGTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12621489_12646263.mRNA False 893 mRNA 0.45 5 12621338 12646399
TU86980 True 216 lncRNA 0.49 1 12626867 12627082

Neighbor

gene id symbol gene type direction distance location
CI01000012_12585843_12587149 NA coding upstream 34129 12585843 ~ 12587209 (+)
CI01000012_12536242_12538668 NA coding upstream 82610 12536076 ~ 12538728 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding upstream 112022 12505469 ~ 12509316 (+)
CI01000012_12489485_12490402 NA coding upstream 130907 12489287 ~ 12490431 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding upstream 155306 12440074 ~ 12466032 (+)
CI01000012_12653960_12664480 SLC1A4 coding downstream 7432 12653831 ~ 12665121 (+)
CI01000012_12667656_12672197 NA coding downstream 21257 12667656 ~ 12672247 (+)
CI01000012_12686685_12690637 TBP coding downstream 40286 12686685 ~ 12691167 (+)
CI01000012_12695280_12699262 RHOUA coding downstream 48881 12695280 ~ 12699426 (+)
CI01000012_12733327_12736780 RAB4A coding downstream 86928 12733327 ~ 12737269 (+)
G76251 NA non-coding upstream 724 12618541 ~ 12620614 (+)
G76364 NA non-coding upstream 14625 12606509 ~ 12606713 (+)
G76362 NA non-coding upstream 19668 12601427 ~ 12601670 (+)
G76361 NA non-coding upstream 19930 12601189 ~ 12601408 (+)
G76225 NA non-coding upstream 22241 12595034 ~ 12599097 (+)
G76391 NA non-coding downstream 36332 12682731 ~ 12683908 (+)
G76384 NA non-coding downstream 38790 12685189 ~ 12685467 (+)
G76418 NA non-coding downstream 71065 12717464 ~ 12717672 (+)
G76419 NA non-coding downstream 71373 12717772 ~ 12718003 (+)
G76374 NA non-coding downstream 100362 12745531 ~ 12749169 (+)
G75533 NA other upstream 1475599 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2397051 10223697 ~ 10236276 (+)
G73578 NA other upstream 4253711 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4813483 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6697033 5922385 ~ 5929186 (+)
CI01000012_13029637_13033226 RGS17 other downstream 369107 13029435 ~ 13038899 (+)
G76645 NA other downstream 1005460 13651859 ~ 13652234 (+)
G76656 NA other downstream 1057088 13703487 ~ 13739731 (+)
G76368 NA non-coding upstream 774 12623379 ~ 12626093 (+)
G76367 NA non-coding upstream 3901 12622608 ~ 12622966 (+)
G76366 NA non-coding upstream 4482 12622140 ~ 12622385 (+)
G76369 NA non-coding downstream 302 12627384 ~ 12627605 (+)
G76371 NA non-coding downstream 3435 12630517 ~ 12630752 (+)
G76385 NA other downstream 3673 12630755 ~ 12675666 (+)

Expression


Co-expression Network