G76251


Basic Information

Item Value
gene id G76251
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12618541 ~ 12620614 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87000
GTAGTTTCAGAAGCAAACCATTTTATTACATATTTCATTAAAGATTATTAAGACCAATACTTTTTTCCTTTGGAATACAAAGTGCCAATGAATCATTCACAAAAAGACCATGAATAGCCCATGTATTAGGAAAGTAAAAAGAGTCCATTTTGATTTCAAATTGACTTTAAGGTCAAAATGAGCGTTATTTATCGAGTAAAACATGTATGAGTCATTTAAAACAACACATCAATCTTCTCTCTAGCCCACAAGGAAAGCACAGAGATGGCAGCAAGGAGTCAGTGAGAGAGACAGAAAGACAAGGAAGCCCGTTCCTGAGGCCTCCCCTCATTAGCATAAAGTGAAGCCCGGTAGCAGTAGGCAGCATTGCAGTGTGCTTGAACCTAATAAAGGCTGACAGCCTCACGCACCCTAGCCCTGCCTGCACACACACACACACACACACAGCGCAGGCGCAGATCTGTCAGGCAGCTCCTCTCACTCAGGAAGTGCAAGTGGCTGGGCCTGTTGCCTTGCTGCCTGTTACCATGACAAACATAGTCAGCTGGGAATCCACCCAAAGACTTGACAAAGAGCGAGAGAAAGAGAGAGAGAGAGAGTTTGGGGGAGAAGAGGGGCTGAGGAAAGTTAAAGAAAGAAATGTTTCTTCCTTGACTGCACTGCTTCTGAGCAGATGAATCTAAAACAATATACGACTAGCTGGAGAGAAAAACAGGTTACATCTGCAGGAGTTGGATGTACATTCCAAAGCATGCATGCAGAGAACACAAATAATTCATAAGATGCAGATTTACAGTCATATGCCATTTGGTTAAGTTTCAATATCAGTATCATTTAGGGCGGACACAGAGTGAATTTTTCAGTTTCTAGAGAGATATTTAAAACAATACATACAAAACATGAGATAAAATAAGCCTGAAATGTGAAAAATAACCAAAAAATAAAATAAAATATAGTGACATACGAACACAAATTAGTCATTTAGTTAAACTTATAAACACCTCCTCTGCTACAGTAAAGGATCAGCAATTACAGTTGTAATGTCTATTATGATGCCAGACTGAAAGATGAGTTTTACAGAAAAGTGTTACAGTAGAGAAGACAATTTCAGGCGGTTTTGAGAGGTTTTTTGGAGGATGAGTAAAAGAAAAAGGCTGTAAGAATGACTCAAGTAATAAAAATAGCATCTTACACTATGCAGCTAAAAAGTCACTGCAAATTTGGGTTGAGATCTATGAGTATTTCGGAGAGACAGACACAAATATGACAGTAAATAACAGGCAAAAATCAGTACCACAGAAGTGTTTAGTCATTCGCTATGGCTATAAACTCACCCAGAGTGGCCCTAGAACTGTATGCCATTGTCTGAAGCTTTCAAGAAAGTCTCAAGCAAATAAAGTTTCCCACAGTAATCCACACAGAGGAATGCCACGGCAGCTGAACGTGTCCTTGTGACTCACGCTGAGGAGTGGATACGACTGTCTGCAGCGCTCAAATGCCACTGCCGCCCCACCCTACGCATTCCTTCTGATTTTGCCTCTGTTTGCTTCTGCTTCCCTCCATCATTTTACTTTCATCTTCAGTGCGAAAGGTCAAAGTGTGTATCATTCTGCTCCCTAGTTCAGAAGTACACTGGCCAGGGAGTTTCTAGGCCTGTTCTGTTCCATTGTCAAAATCACTTCAGTGCACTGAAACATTCACTCCCTAGAAATTCCCAGAATGCGTTGTAAAAGCCAGTACTGATTGGCTGCTCACTATATTCACTTACTGGAAATGTCATCAAAGGACAAGCACAAGTACCAATATACAAAGACAAAAGTTTATTTTCTGTATTTAAAACATTTTTTTGAAACTGACAAAAATCCAGCTTTTTTGAAGTATTATTCAGGAATTAAGAAGATTGAAAAGATTATTTTCATTTTAGTTGTCCATTTTCTTGTACTGAGGTGCTAACATTTATAGTAGATCTATCTCTTCACACTGAGGACAATTGAGGGATTCATACGCAAGTATTACAAAAGATTCAAACATTCATTGATGATCCAGAAGGAAACACGATGCATTAAGAACCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87000 True 2074 lncRNA 0.39 1 12618541 12620614

Neighbor

gene id symbol gene type direction distance location
CI01000012_12585843_12587149 NA coding upstream 31332 12585843 ~ 12587209 (+)
CI01000012_12536242_12538668 NA coding upstream 79813 12536076 ~ 12538728 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding upstream 109225 12505469 ~ 12509316 (+)
CI01000012_12489485_12490402 NA coding upstream 128110 12489287 ~ 12490431 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding upstream 152509 12440074 ~ 12466032 (+)
CI01000012_12621489_12646263 NA coding downstream 724 12621338 ~ 12646399 (+)
CI01000012_12653960_12664480 SLC1A4 coding downstream 33217 12653831 ~ 12665121 (+)
CI01000012_12667656_12672197 NA coding downstream 47042 12667656 ~ 12672247 (+)
CI01000012_12686685_12690637 TBP coding downstream 66071 12686685 ~ 12691167 (+)
CI01000012_12695280_12699262 RHOUA coding downstream 74666 12695280 ~ 12699426 (+)
G76364 NA non-coding upstream 11828 12606509 ~ 12606713 (+)
G76362 NA non-coding upstream 16871 12601427 ~ 12601670 (+)
G76361 NA non-coding upstream 17133 12601189 ~ 12601408 (+)
G76225 NA non-coding upstream 19444 12595034 ~ 12599097 (+)
G76249 NA non-coding upstream 27035 12590707 ~ 12591506 (+)
G76366 NA non-coding downstream 1526 12622140 ~ 12622385 (+)
G76367 NA non-coding downstream 1994 12622608 ~ 12622966 (+)
G76368 NA non-coding downstream 2765 12623379 ~ 12626093 (+)
G76369 NA non-coding downstream 6770 12627384 ~ 12627605 (+)
G75533 NA other upstream 1472802 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2394254 10223697 ~ 10236276 (+)
G73578 NA other upstream 4250914 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4810686 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6694236 5922385 ~ 5929186 (+)
G76385 NA other downstream 10141 12630755 ~ 12675666 (+)
G76374 NA other downstream 124917 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 394892 13029435 ~ 13038899 (+)
G76645 NA other downstream 1031245 13651859 ~ 13652234 (+)
G76656 NA other downstream 1082873 13703487 ~ 13739731 (+)

Expression


Co-expression Network