CI01000012_12653960_12664480 (SLC1A4)


Basic Information

Item Value
gene id CI01000012_12653960_12664480
gene name SLC1A4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12653831 ~ 12665121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12653960_12664480.mRNA
GTATAAGTGCCGGCCGGTTTTTACAAGCGCTCTCCAGTCCGCTCCCTTCCAAGCGCGCGCACGCTGCTGATGAGAAAAGCCTGGTACCTCTTATAAACGAGTGGAAAGACTGAGCGTGTAGGGAAAATCATGGAGGAGAAGAGCGAAATCAATGGGCACGCCGGGCACAAAAGCCTGTTGCCAGCGGTCTCAGTAAAATCAGAAAAGAAAAGCTTTAAAGACAGGTTGATGGTCTTCTTCAAAAGAAATCTCTTAGTGATCCTGACGGTGTCCGGGGTTCTGGTGGGCGTAGGGCTCGGGATGATGGTCCGGAACATGAACCTAACCCGAGCGCAGATGACTTATTTCGCCTTCCCCGGAGAGATGCTGCTGAGGATGCTCAAGATGATTATCCTTCCTTTAGTGGTCTGCAGTTTGATTTCTGGCGCTGCGAGTCTGGACACGCGCTCGCTGGGAAAGCTCGGAGGGATCGCCGTGTCTTACTTTCTGGTGACCACTCTGATCGCTTCATCCATCGGGGTTGCGCTCGCCTTCATCATCAAACCCGGCGTGGGAGCCGGAGCGCTGAACACCAACGACTTGGGGCTGGAAGACTTGAGCTCCAACAAAGAGACAGCGGATTCGTTTTTAGACCTTGCAAGAAACCTGTTTCCATCCAACCTTGTGGCCGCAGCTTTCCGCTCAGCCAGAGTAGCTTTAGAAAGAGAAACAGGGTCATTAGGTGCAAATGGATGTTTCTTTATCCAATGGGAGAATGTTTCTCTATCCAGTGGGATTTCCATCAACACTTGCCTGGATGGAGTCCAGACAGGCTTTAAAGAAAAAGAGACACAGATTAACAGGATTAATACAGAAATGCCTGGGAATTATTTTAATCGCCATCTACATATGGACTTGTCCAAACTCATTTTTGTAGATCTATTCCAGTATGTCACTGATTACAAGACGATTCTTGTTGGAAATGGAACAAATGGAACCCTCAACTACCAGAAGGTTCCCTTTGGAACAGATGCAGATGGAATGAATATTCTGGGCCTTGTTCTCTTCGCTATGGTTTTTGGAGTTGCTTTGAGAAAGCTTGGGACAGAAGGAGAGGAGCTCATTCGTTTTTTCAATGCCTTCAATGAAGCCACCATGGTATTGGTGTCCTGGATCATGTGGTATGTGCCATTTGGCATCATGTTCTTGGTTGGCAGTAAGATTGTGGAAATGGAAGATGTGGTTCTGTTGGTCACTAGTTTGGGGAAGTACATCTTTGCCTCTATCCTGGGCCACATCATCCATGGTGGCATTGTCTTGCCTCTTATCTACTTTGGGTTCACTAGTAAAAACCCCTTCAGTTTCCTGTCTGGCCTCATCACACCTTTCACCACAGCCTTTGCTACCTGCTCCAGCTCAGCGACCCTGCCCACCATGATGAAATGTGTAGAGGAGAACAACGGTGTTGACAAACGAATCAGTCGGTTCATTTTACCGATTGGAGCCACTGTCAACATGGACGGAGCAGCCATTTTCCAGTGCGTTGCGGCTGTGTTTATTGCCCAGCTCAACAATGTTGACCTCAACGCAGGCCAGATCTTCACAATCCTGGTGACAGCCACCGCTTCCAGTGTGGGAGCAGCAGGTATCCCAGCTGGTGGGATCATCACCATCGCTATCATTCTGGAGGCCATTGGTCTGCCCACCCATGACCTGTCACTCATGTTGGCTGTGGACTGGATTGTTGACCGCACGACCACCGTTGTGAACGTGGAGGGAGATGCCCTCGGTGCTGGAATCCTTCACCACATCAATGAGCAAGAGAGGAAGAAACAACAACAGCAGCATCAAGAGGAGCAGGAACTGCAAGAGGTGAAGGTGGATGTGGTGGCTAATGTCAAGGCAGAAGAAGAGACCTCCCCTCTCGTCACACACCAGAACCAAGAAGAAAGCTCCTCACGTGAAACACTCAACGAAAAGGACGGTGTGGAGTCTGTGCTGTAAAGTGTTGACTGTGGTCTCCCATCTCTTTCTTCACTCTTTTCTCTTTTTCACTCTTTAAAAACCACTATAGACATTATGTCACCACCAGTGCGAAGTTGACATCATATGTAAAGTTTACTTATTCCTGTGAATGGAACACTAATGGTCAGTTTGCTTTTACATTTAGTTTTAAGTACTTGACAAAAGAACAGGTTTTGTTATGATAATCTTATCCACCTGTGCCAAAATTATTTCTTACTATCAGTTTTTGGGTTTGAGAACATGTCCCAGATTATGTGCAAAATCTAAAAGGGAATATTTCCAATCTGCAAACAGAGATGGGCAGTAATGAAAATCATTCACAGACTGACCTCTTGCTCTTTGTTTGTTTGTTATATTTTTACTGACTGTGTGAAATATTAACTATTTCAAAGATAGACCAGAAAGTATTTGCTGTAAATATTTGTGTCCCTAATGGCAAATCCTGTTGCATTATGGTATAGTCTGGCGATTTTGGGGGGCTGTGCATGTGTGCTTGTGAAGTACTCCTGTGAATTCTAGCAGATTCAGAGCTTGTGCTTTATGGTTTTAGTACTTTAAAATATGATTTAAGTGAACGCCAAGCTCAGAAATTGAGACAAAACTCAGGGTCACATGTGATA

Function

symbol description
slc1a4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05615 SLC1A4, SATT; solute carrier family 1 (neutral amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12653960_12664480.mRNA True 2624 mRNA 0.46 9 12653831 12665121

Neighbor

gene id symbol gene type direction distance location
CI01000012_12621489_12646263 NA coding upstream 7432 12621338 ~ 12646399 (+)
CI01000012_12585843_12587149 NA coding upstream 66622 12585843 ~ 12587209 (+)
CI01000012_12536242_12538668 NA coding upstream 115103 12536076 ~ 12538728 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding upstream 144515 12505469 ~ 12509316 (+)
CI01000012_12489485_12490402 NA coding upstream 163400 12489287 ~ 12490431 (+)
CI01000012_12667656_12672197 NA coding downstream 2535 12667656 ~ 12672247 (+)
CI01000012_12686685_12690637 TBP coding downstream 21564 12686685 ~ 12691167 (+)
CI01000012_12695280_12699262 RHOUA coding downstream 30159 12695280 ~ 12699426 (+)
CI01000012_12733327_12736780 RAB4A coding downstream 68206 12733327 ~ 12737269 (+)
CI01000012_12761469_12776431 URB2 coding downstream 96348 12761469 ~ 12776470 (+)
G76371 NA non-coding upstream 23079 12630517 ~ 12630752 (+)
G76369 NA non-coding upstream 26226 12627384 ~ 12627605 (+)
G76368 NA non-coding upstream 27738 12623379 ~ 12626093 (+)
G76367 NA non-coding upstream 30865 12622608 ~ 12622966 (+)
G76391 NA non-coding downstream 17610 12682731 ~ 12683908 (+)
G76384 NA non-coding downstream 20068 12685189 ~ 12685467 (+)
G76418 NA non-coding downstream 52343 12717464 ~ 12717672 (+)
G76419 NA non-coding downstream 52651 12717772 ~ 12718003 (+)
G76374 NA non-coding downstream 81640 12745531 ~ 12749169 (+)
G75533 NA other upstream 1508092 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2429544 10223697 ~ 10236276 (+)
G73578 NA other upstream 4286204 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4845976 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6729526 5922385 ~ 5929186 (+)
CI01000012_13029637_13033226 RGS17 other downstream 350385 13029435 ~ 13038899 (+)
G76645 NA other downstream 986738 13651859 ~ 13652234 (+)
G76656 NA other downstream 1038366 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001648 slc1a4,LOC102791775 coding CM030143.1 CM030143.1 10730901 ~ 10746052 (-)