CI01000012_12667656_12672197


Basic Information

Item Value
gene id CI01000012_12667656_12672197
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12667656 ~ 12672247 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12667656_12672197.mRNA
ATGGCTCTTGGAGTTGACAAGGCTTTATCAGACACCTCCTCGCAGATGGAGAACAAGAGCTATGGGAGGTGGAAGACCAGGATCCCAGAGTTCATTCGCAGCGGTCACTCTAAACCCCTCAGTCAAAAGGCAACTGAGAAGACAAGGCCTACAAATGTCCAGGGAGCTAAAGACTCAGACAAAGAGAGGAGTGGCTGCAAAAAGACAGTCACCATGGCACCTGTTTCCAGGTATATGACAGACAGAAGCCTCTATACCATGAGGAAACCACTGATCTCCACACAATGCCAGATGCCCATCCTGAAGAACTCATCCACACATGAAGACTCGGAGAGGATCAGTTACAAAGAAGATTCCTCTAAAGAAAAGGACAAAAGTCTGCCCAAAGAGTCATTTGGAAGTATCACACAAGTTTCTCCATATTATAAACCCTCCCCTGCATTATCCAGAGAAGACCTGGATACTTCCATGAACATATCGGACCTCAGACTATGGTCATGTGACAAGGATCCTATTTTTAACACTTCGGCTGCCAAACGCAGTCTGTCCAGTCCCCCTTCAGCTTCCTTGAGCCTCACAGAACCCCCAGTGCCTAAGTGGATGTCCACACCTAGAAGCACTTCTCACTCATCCAATCATACGTCTCATTTCACGAGAAAGGTAAAAACAAGAAAAGGTGAGATGACGGACACAGGAATAGATTCTCTTCTTAACACAGGATCTTCTGAGTTTTACAATAAGAACCATCAACGTGGGTTCAAACACATGTCGCCTTATCAGGCCAACTATTGGGCCTGTGCCATCCCCAACTCCATGCCACCCTCCCCAAACCGCAAATCCCCCAGCTGGGATCCTGAAAAGGAATATGAGGCGCTCCTGGACTACACATACCCTCTGAGACCCAACATCACAGGCACAATGGGTTCACCAGAAGGAGATCTTCTCTTACGAAATGATCTGTTGTTGCAAGACTCAGGCATTGAGTTGGATCGCTTTTGCAGCTCTTCCACCCTGTCCTGTTTGGACCTATCCCATACAAGGACTCGGCAGGGATGGGGTAGTCCAGGAACAGGTCGAAAGTCAACTGAGTTTCATGCACTAAACCAATCACATTCAAAGACCTCAGATGGTATCATGTCCAGTAGCCTGTACTCCTCTCTAGACCAAGCTGGCTTGTCAGTTGAGAGTCTTGACTACGACAGGAAGCCAGGGGGTCATTACCGTAAATTTGGCATCTTCTCAACATTCAGATCTGTCCCCACTTTCATTAGTTCAACACATGTCCTTCCTCGTCCTAATGCGCAAGACGAGTTAGATGAAGAGTTCCTTCGCCTACCAGAACGTCTACAAGAACTTCAGGTGCTTTCACAGCAACTGAGGGACATTAGTGACCAGATAAGCCAGCCGGTCATCACCAGCTGGGAATCCTTGGAGAGCGAGAATACCTCCGTCAGATCACCAACGGATCAAGTGGGAAAGCATGAACCGTTGATGAAAGAAAGGGGTGATGAAGATATTGAAGCGGAGAGGGGATCTGAAGTTCCTCTCACATCTGAGGATCATTTAGAGAAAGCAAAGGAGCCTGGTACCAGAATCCAGATGATTAGCCGAGATGTGAATAGAAGGAACCTGAGGGAAGTGGAAGCTATTATGGATCAGCTGAGTGGACTGTCAATGTCAGAGCTTCAGAGGACAATACAAACAGACCAGGATGAATATGAGACCCAGGAGTCTCTAATGCAGCACATACAGGTATTTTGCTCAAACCTAGAAAAGCTGGTTCGGTGGCTGCACAAGGTGGTAGAGAAAGTAGAGTTTCTATCTCCTCCCGTGGTTGAATTGGAGAGTGTCAAAGCCTCCTTGGCTGATTACAAGAGTTTTCAGGAAGAAGTTCAGGCTCATAAGCCCCTCACAGCAGATGTTCTTCAGACTGGAGAGATGCTTTTGCATTGCATGAATTCCGCCTCTCCGTTTCTGAAAGACACACTGGTGCTGATAGAGCGGCAGTCTCACACACTGGAAACTCATTCAGAGTTTCTTTTCTCCTCTATTCTGTCAGCCATGGACTGCCTCACTGACCCCAGATCTGAGGAAGCATCAGGTAAATGATCTACTATTATGTATAGTGCCCTCTAGTGTCATCAAATGGTTATATATCA

Function

NR:

description
Zgc:112945

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12667656_12672197.mRNA True 2159 mRNA 0.47 5 12667656 12672247

Neighbor

gene id symbol gene type direction distance location
CI01000012_12653960_12664480 SLC1A4 coding upstream 2535 12653831 ~ 12665121 (+)
CI01000012_12621489_12646263 NA coding upstream 21257 12621338 ~ 12646399 (+)
CI01000012_12585843_12587149 NA coding upstream 80447 12585843 ~ 12587209 (+)
CI01000012_12536242_12538668 NA coding upstream 128928 12536076 ~ 12538728 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding upstream 158340 12505469 ~ 12509316 (+)
CI01000012_12686685_12690637 TBP coding downstream 14438 12686685 ~ 12691167 (+)
CI01000012_12695280_12699262 RHOUA coding downstream 23033 12695280 ~ 12699426 (+)
CI01000012_12733327_12736780 RAB4A coding downstream 61080 12733327 ~ 12737269 (+)
CI01000012_12761469_12776431 URB2 coding downstream 89222 12761469 ~ 12776470 (+)
CI01000012_12832011_12865894 GALT2, GALNT2 coding downstream 159764 12832011 ~ 12865894 (+)
G76371 NA non-coding upstream 36904 12630517 ~ 12630752 (+)
G76369 NA non-coding upstream 40051 12627384 ~ 12627605 (+)
G76368 NA non-coding upstream 41563 12623379 ~ 12626093 (+)
G76367 NA non-coding upstream 44690 12622608 ~ 12622966 (+)
G76391 NA non-coding downstream 10484 12682731 ~ 12683908 (+)
G76384 NA non-coding downstream 12942 12685189 ~ 12685467 (+)
G76418 NA non-coding downstream 45217 12717464 ~ 12717672 (+)
G76419 NA non-coding downstream 45525 12717772 ~ 12718003 (+)
G76374 NA non-coding downstream 74514 12745531 ~ 12749169 (+)
G75533 NA other upstream 1521917 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2443369 10223697 ~ 10236276 (+)
G73578 NA other upstream 4300029 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4859801 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6743351 5922385 ~ 5929186 (+)
CI01000012_13029637_13033226 RGS17 other downstream 343259 13029435 ~ 13038899 (+)
G76645 NA other downstream 979612 13651859 ~ 13652234 (+)
G76656 NA other downstream 1031240 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location