G76368


Basic Information

Item Value
gene id G76368
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12623379 ~ 12626093 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU87120
CAGTTAATATATATCAACTAACAGGAAGAAAAAACCATTTTTCCCTTAATGCGGTCTTTAAAGGCAGATGATAAGAGAGAGGAGAGACAGATAAACACTCAAATCTGTAGTCTTATTGTTATTGTAGAAACATTTCAGGTACATGTTTCATCATCCTCTCCACTTGGGCTCTCTACTTAGTGTAATTTGTTGCAGTGCAAAGTTGGAGTGCAATTTAAACGAGAACTCCTGATGAAGGCCCAATGACACTGAACAAACAAGCAAATAAGTGAGAAAGTGAGACCGACTAAGAAAAACGGAAAAAGGCAAGACAGACCGAGAGAAGGCAGTGAGAGAAAAGATAGAAGGAGAGAGAGGGATGTGTGAGACGGTAAACATAGAGCGATTGAGACAGACAGATGGAGAAGGCCCAGACACCACATTCTCACACAGCACTGAGCGAAAGCTGCAGGGGTCAGACAACCGTCTGACATCTTAAAAACTAACAAAATAACATGTCTGTAAAACTGTCGCATGCTGGATCTGTACTGTACCTCACCCGTGCCTGCTTTACGATCTTTACTTCATAGCAAAGTCTTACAATACTAAAGACAGTCAAATAAGTGGACAGATACACATCTGTTGCTGTACTGTTTTTTATTAGGATGTGATATCAATTGTTTTGCCCAAAATTGAGAAGTAATAAAAGCAAACATCAATAAACAGAAAAATGAGACATGTGGCCATATAAAACGTTAGAGCTGCCTGTCATTACTTTCAGAGAGCTGATGAAAACTCATTCTGCAACTGATGCTCTTCAAATTAGCAGATAAGATGTCTGCAACAGCTTTTTTTTGGCCACTGTGAGTCATAACTTGTAACGATATGTAAAAAGAGTTACTAATGACTAATATATATATATACACATACACCGAATAAATCAAAAATACAGTAAAAACTGCAATATTGTAAAATATTATTAAAATTTAAAACAACTGTTTTCTATTTTAATCTATTACAAAATGTAATTTATTCCTGTGATGGCAAAGCTGAATTTTAAGCATCTCATTACTCTAGGCTTCAGTGTCACATGATGCTTCAGAATTCATTCTAAGATGCTGATTTGCTGCTCAAGAAAAGTTGAATGCATTCCCCCCTGTCTTCATTGTGGATCTATCTATCTATCTATCTATATATAAAAGCATAAAAGTGATAAAACTTTACGAAAGTCACTTATAAATGAAGTATGGACTGGAGTGGGTGACACTTCAGAGCAGGCAGAGCTGCGGGTCTCAGTCTCAGAGAGCAGCAAAAAAGGCGTGACACATACTCTGAGAATACACTGAATGTTGCAAATCACTGCATCATGCACTCATATACATACCTTTTACATTACATTGGATATGTTCACTTTGTTGGACACCTTGTCCATACATTAAGGAAGGATGTATGAAAGCTTTGCACTTATTTTAACAGAAAATACTCAGTTTGGCGCTAAAATTATGCCCTAAAAAAAATACCACAGTTTTTGGAGTAACCTAAACTGTGCTGTAATATATACTAAACAAAAACAACAAAAAATGTGTGCAATATACACAAGTAAAGATAAAAGCTTCACTTGAACTTCTCCTAAATGTCAGACTCCTGTTAAAAAACAGCTAAACAGTAGCATAGAGAGGAACGCAATTCAAACCGGTTTGACCAGAGGGGCAGAAGTCTTAGAGCACTATGTGAAGGCGTAAGATAGGCACACACACAAATGCACACACCATTTAAACGAAAATAAAACTCAAGCAACAGGTGACGTGAAATGAAACTAATAAACAGTAATTATTAGTCTTCCTTCTTTTCATTACTAGACCTCCTCACTACTAATCAGTTAGTGTCATGTCATTTTAAGAGACTAGACTGTAAGACAAGCTATTTTATTTGCAACTGAAATAGCAATATATAACTAAAACTTATGTTTAAAAGACTCTGGAACAATATCTCATTCAAAAGACTAACTAATAAGTCCAATTTTGCCATATAAACCTTATAGGAAAAACCTGAGCGGCCCATCAATATATAATGGCACAGAATAATTTGTCCACAACACTATAAAAGTCAAAAAGGTGAATTCTCTGGACCTTGAATACACCCACTATGTGTGACATTTATAATTAATTAAGGGACAAAACCTCATTTTACTTCTGTGACTGTTGCAGGAAGGAAGTGCACATTTAAAGATGGCACAGAGAGTACAACATGTAAATGTCACAGAGTCAGGTTTTTTGTTTAAAGGAAATAAGACAGCAATACGATGAGCAGACTGACAAAAGCAGGGGTTGTAATCTACTTTGCTTAATGTGAACCGTGCATTCACTAGAAAATCCAACTGGACCTTGATCCTCTGAATTTACTGAGTGTGTGCGTGTGTGTGCGTGCATGTGAGTTATTCGGACTTTGAATGCCAGTGTGTCTGACAAGGAAAGCAACTGCAAAATAACTGCAGCTCTGAGTCGCCACAGATTCACAGACGTCTTTACAATAAAGATAAAGAATAATCAGTAAAAGTTATGAAAACAATGTAGTATTTTTCACTACATTGTGATGAATTTATCACTGCAGGTTGTGACTTAAGATTTTACTTTAAAAATTAAACTGCAGTTTTTTTTTTACAGTGTAGTTTAAAGCAAATTTTCGAAAACCAAAACGAACGACTTTGCTCACACACTGAGACATAGACACTGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87120 True 2715 lncRNA 0.36 1 12623379 12626093

Neighbor

gene id symbol gene type direction distance location
CI01000012_12585843_12587149 NA coding upstream 36170 12585843 ~ 12587209 (+)
CI01000012_12536242_12538668 NA coding upstream 84651 12536076 ~ 12538728 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding upstream 114063 12505469 ~ 12509316 (+)
CI01000012_12489485_12490402 NA coding upstream 132948 12489287 ~ 12490431 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding upstream 157347 12440074 ~ 12466032 (+)
CI01000012_12653960_12664480 SLC1A4 coding downstream 27738 12653831 ~ 12665121 (+)
CI01000012_12667656_12672197 NA coding downstream 41563 12667656 ~ 12672247 (+)
CI01000012_12686685_12690637 TBP coding downstream 60592 12686685 ~ 12691167 (+)
CI01000012_12695280_12699262 RHOUA coding downstream 69187 12695280 ~ 12699426 (+)
CI01000012_12733327_12736780 RAB4A coding downstream 107234 12733327 ~ 12737269 (+)
G76367 NA non-coding upstream 413 12622608 ~ 12622966 (+)
G76366 NA non-coding upstream 994 12622140 ~ 12622385 (+)
G76251 NA non-coding upstream 2765 12618541 ~ 12620614 (+)
G76364 NA non-coding upstream 16666 12606509 ~ 12606713 (+)
G76362 NA non-coding upstream 21709 12601427 ~ 12601670 (+)
CI01000012_12621489_12646263 NA non-coding downstream 774 12621338 ~ 12646399 (+)
G76369 NA non-coding downstream 1291 12627384 ~ 12627605 (+)
G76371 NA non-coding downstream 4424 12630517 ~ 12630752 (+)
G76391 NA non-coding downstream 56638 12682731 ~ 12683908 (+)
G76384 NA non-coding downstream 59096 12685189 ~ 12685467 (+)
G75533 NA other upstream 1477640 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2399092 10223697 ~ 10236276 (+)
G73578 NA other upstream 4255752 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4815524 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6699074 5922385 ~ 5929186 (+)
G76385 NA other downstream 4662 12630755 ~ 12675666 (+)
G76374 NA other downstream 119438 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 389413 13029435 ~ 13038899 (+)
G76645 NA other downstream 1025766 13651859 ~ 13652234 (+)
G76656 NA other downstream 1077394 13703487 ~ 13739731 (+)

Expression


Co-expression Network