G76249


Basic Information

Item Value
gene id G76249
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12590707 ~ 12591506 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU86998
AAGAACCGCCGGTGATGTGGTTGTAATTCAGAGAAATTTGCTCCAAAAGAGGTGTGTGGAGGCTTTGCAGCTGCTAAATGTGGAGTGAAAGTGGAAAGATGGAAGACTGATGGAAGAAAAGACATTCGGAGGAGCCAAGACTGTCTGATCAGTTCAAAGCTCTTTTCTTTTACCGAGGAACCATGCTGCTCCCTCTTTGGTTCTGCTTTTTTAAATGAGTTTATCACGCTATGAGGAGCTGCCTTTGCCAAAATGTAACGTTTTGCCTCTTTTGTCTGAGCTGAGCGCCTCAATTCGGTCTACATTTATTATTTTGACCTTTCGTTAGCAGGGGATAGACTTCAAAGTGGAACCTCTCTTTTGCTGTCTTTAAGGAGACCTTTGTGCTGTTGCGGTGTGTGGAGAGAACGTTTTTTTCTCCTCTTTTAAAAGTTTTGTTCCAGGGGCTGAGAAGAAAGCTGGACTCTGAGGGAATATTGAATGAAAATTAAAATCAATTAGGCTATGGACTTTTGAGAGTGTTTGGAACGACGCCGTGCGAAAAAAAGCCTAGATTTTCAAGTGAGAAAATGCCCTCAGTTGATGTGCAATTGAGATGAATAGACTCGTCCTATAATTACATTTGCTGTGGTCCTTCTGGACGCTGTATTTCACATAAAATGGTCAGTGTTTAATGCGTAAAAGTGGGTTGCAAGTTCTCTGGTGATCTTTAACCTGACAGGTGACGATTAAGCGACATTAGAAACTTTAGAGTGATTCATCAATAATTAGAAAGTTTGAGCGGTTTGGTTTAAAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86998 True 800 lncRNA 0.41 1 12590707 12591506

Neighbor

gene id symbol gene type direction distance location
CI01000012_12585843_12587149 NA coding upstream 3498 12585843 ~ 12587209 (+)
CI01000012_12536242_12538668 NA coding upstream 51979 12536076 ~ 12538728 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding upstream 81391 12505469 ~ 12509316 (+)
CI01000012_12489485_12490402 NA coding upstream 100276 12489287 ~ 12490431 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding upstream 124675 12440074 ~ 12466032 (+)
CI01000012_12621489_12646263 NA coding downstream 29832 12621338 ~ 12646399 (+)
CI01000012_12653960_12664480 SLC1A4 coding downstream 62325 12653831 ~ 12665121 (+)
CI01000012_12667656_12672197 NA coding downstream 76150 12667656 ~ 12672247 (+)
CI01000012_12686685_12690637 TBP coding downstream 95179 12686685 ~ 12691167 (+)
CI01000012_12695280_12699262 RHOUA coding downstream 103774 12695280 ~ 12699426 (+)
G76234 NA non-coding upstream 48646 12541589 ~ 12542061 (+)
G76235 NA non-coding upstream 49627 12539643 ~ 12541080 (+)
G76201 NA non-coding upstream 55977 12525488 ~ 12534730 (+)
G76239 NA non-coding upstream 66726 12517066 ~ 12523981 (+)
G76341 NA non-coding upstream 87177 12503212 ~ 12503530 (+)
G76225 NA non-coding downstream 3528 12595034 ~ 12599097 (+)
G76361 NA non-coding downstream 9683 12601189 ~ 12601408 (+)
G76362 NA non-coding downstream 9921 12601427 ~ 12601670 (+)
G76364 NA non-coding downstream 15003 12606509 ~ 12606713 (+)
G76251 NA non-coding downstream 27035 12618541 ~ 12620614 (+)
G75533 NA other upstream 1444968 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2366420 10223697 ~ 10236276 (+)
G73578 NA other upstream 4223080 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4782852 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6666402 5922385 ~ 5929186 (+)
G76385 NA other downstream 39249 12630755 ~ 12675666 (+)
G76374 NA other downstream 154025 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 424000 13029435 ~ 13038899 (+)
G76645 NA other downstream 1060353 13651859 ~ 13652234 (+)
G76656 NA other downstream 1111981 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G216272 NA unknown NC_035921.1 CM008324.1 13637361 ~ 13638001 (-)