CI01000012_12381049_12417489 (KAT6B)


Basic Information

Item Value
gene id CI01000012_12381049_12417489
gene name KAT6B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12380192 ~ 12418697 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12381049_12417489.mRNA
GTATATATATAAAATTGTTGTTGAGTTGTCAGTGTTTTGGAGTGAAGAAAGAGTGAGCTAGTGAGCTGCCTATCTAAACTGCATATATGGGCATCATAGACATGTGCAGTATTTTTGATGTGTGTGTGTGTGTAGGCAGATTTGAGTACCAGCTATAATATTCTCATAAAGTGGCTCACATTTGATGAAAATGTGATTTAACATGTTCATCTATAATCTCATGGTTGTACTGGTCTGTCTGGTTTGGACTGTTGATTTTTCCTTTTATGGAATGTGTGCACCTAACACCTAAAGTCACGTGTCCTATTCCTTCACTTATATCCTTGCGCACACACACACACACATATATACATATATAATATAATATAATATATATATATATATATATATATATATATATATATATATATATATAAACTGTCATTGTTTTTCACTTTGAGATGTAAGAATCCATGTGTTTTTATCAAGCAGGAGTGTTGGTTAGCCTAACCCTCCAGGTCAAGTTTGCTGTGCCCATGTAACTAGTTCTGGAGTGGTTCCAAAGAGAGTTTGTTTCGTTGCAAAGTAACATGGATTTTCTGTTTTTCTTCTCTTCACACCCACAGGTGTAACTCAAAAGGATTTTTCAGCAAGTCTTCTGACTTTGGATTTTACTACCACAAAGGATTTTTTTTTTTTTTTTCAACAAAGGGGAAAAGAAATGAATAGCCAGTCTAATTTTTGAGGAGTTACATCAATCCCATATCCTGTTCGGCATGTACTAATGGCTGGCTTTTGTTTGTTGATGCGTATGGTTCGCTCTTAAAAGAAAGGAATGTATTCATGGATCACACCTTAATGAAACAACTTATTTCACCATGGTGAAACTGGCCAATCCCCTGTACACAGAGTGGATTCTTGAGGCTATTCAGAAGATCAAAAGGCAGAAGCAGCGGCCTTCGGAGGAGCGGATTTGCCATGCCGTCTCAACCTCACATGGACTAGACAAGGGTGTTGTACTCCAGCAGCTGGAGCTCGCTGTGAAGGATGGATCCATCCTTAAGGTTACCAGCAAAGGGTGCGCTTCGTACAAAGACCCGGATAACCCAGGAAGGATTGCGCCTTTCAAGCTGGGAGGCTCTGGACCGGTCTCAGTTGGATCCGTGATACCTGCAGGAGATCTGCGTCATGTGGATTGGAATAAAATCCTTAGGAGGGCTATTGAAGGTCTGGGCGTCCCGGCTGGCTCATCTCTAAGGAACATCGAGAGATTCCTTAGAAGCCAGGGCGACCTGGTGAATGTTGTGGCGAACCCGAGGTTTCAGCAGAGGCTGAGGCTAGCTGCTAAGCGGGCGGTTAACAACGGGAGGCTGCTCAAGGATGGGCCGCTCTACAGGATGAACAGTGGTGGACTGGGAGGAAAAGCATGCTTCAGGAGTTTGGGGGTCTTTGCTGTCGACCTCCCACCTGTGACACTACTCCCTCATGAAAGAGACCAGCCACGTGCTGACCCCATACCCATATGCAGCTTCTGTTTGGGCACAAAGGAGTCCAATCGAGACAAGAGGCCAGAGGAGCTGCTGTCCTGTGCTGACTGTGGGAGCAGCGAAGTATTGGCAGTAGGGTTTTACACAATCACAGATGGATTCAAGCTGAAAGCAAGGGCTTTTGTGTTTCCTGCCAAAGTTAAAGGATTAGTTAATGGCAGTTTGTCTGAAATGGGCATGAATGTGGATCTGCCAAGTATGCAGGCCAAAGGAGCAGGAGGGAAAACGGTTGCTACACAAGACAGCGGCCCAGATCAAAAGGCGATATGCAAAGCCAGGAAGGCCAAGAAAAAATCTAGCACATCCAACAATCCTGGAGCATTCTTTGCAAGTCTATTTTTAACATATGGCCGTGTTGTAAAGCATACTCAGAACGCTGTCAGTCGGACTGGGTCTGACAGTGGTGGTCCAGGATCCGTTGAGCTGTCTGAAAAAGCACGGCATGGTAGGGGTTCCATAAGCACTTTCTGTACCCCACCCTCATCAAGCACCTTTATACCCACCACAGACGGCAGGAGTCTCACTGACCCCCTCACATCCACACCCACCCTCACTACGTTGCCCCCAATCAACAAGAAAACCAAAGGTCTCATTGACGGGCTTTCCAAATTTTTCACGCCATCGCCCTTGGGTCGCCGATTGCGCGGTGAGGCGTCGGGCTCCTCGAATCAGCACAGGCAGAGGAAACGAGGCTATCGGAAACACCATGCCAGCGTGACGACGCCAGGTGTGAGGTTAAACGCCCCGTCTAGTGTTCTCCTTACCCCGTCCCCTTCGCAAGGACACAGCCCCATCTCGCTGAACCCCACCCAGTCGTCCTCTCCTTCCTCCGCCCACTCCCCCCACAGCTCCTCCTCCCAGTCTAGCGGCCCGTCCCTAAGTAGCCTCCCAGGCAACAACCAGCTGAAGGGACTCTTTGATGGACTGTCTCACATCTTTACCACTCAGGGACAGTCCCGGCAAAAGGGACTCCCCAGCTACGCACCGCCCAAGCGAGCGCGCCGCACCCAGGACGTTTCCACCTCACCCAAAACATCCCTGCAGCTTCAAGGAAAAAAGCCTGTCAAGGGTTTCGGTAGTAAATTAGCATCCCTGTCCGGTTCGGCCTCAGGATGGGCACCCAAGCGGGGCCGACCATTTAAGTCGGCACTCCATTTCAAACGAACTCCTTTCTTGAGAAAGCACAAGCTGCTAGGCAGGTTTAGGTTTAAGGCCTCCCCGCAGAGGGAGAACAACACACCAGGGAAGGGCAGATTGGCAGACGGAAGAGTTAAACCAGACCCAAACCATGCCTTTAATGCCGAGAGATGCTCAAGAAGAGAGCCACAGGAAGGAAGGATGATTTTACTCAATGACCATGTGGCTGAAGAGGATCTGAAATTGTTCAGACACATCAAGGAGATCACAGCAAAGAAAACTGTTGGCGATCAAGGACAATCTCCTCCTTTGATTGAGTTTGGGAAGTATGAAATACAAACTTGGTATTCCTCACCATACCCTCCAGAATACTCAAGATTACCGAAGCTTTATCTCTGCGAGTTCTGCTTAAAGTACATGAAAAGCCAAGACATTCTGCAGAGGCATTCAAAGAAATGTGGGTGGTTTCACCCTCCAGCTAATGAGATCTACAGGAAGGATAACCTCTCCGTGTTTGAGCTTTTCCTGGACCACAAGACGCTGTATTATGACGTTGAGCCTTTTCTCTTCTACGTTCTAACACAGAATGATGAGAAGGGTTGTCATCTTGTTGGCTACTTTTCAAAGGAAAAGCTTTGCCAGCAGAAGTACAATGTCTCCTGCATAATGATCATGCCTCAGTACCAAAGGCAAGGATTTGGAAGGTTCCTCATTGATTTCAGTAAGTTATTCATTAACTGGTTTGGAAGTCTTATGAGATGTGAGGGTTACTTACTTTCCAGGCTAGAGGGCCAGGCTGGCTCCCCAGAGAAGCCTCTATCTGATCTGGGTCGTCTGTCCTACTTGGCTTATTGGAAAAGTGTCATACTGGAGTACCTGCACAACCACCCAGATAAGAGTGTCAGCATCAGGGGAATGAGCCGAGCCACGGGCATGTGTCCACATGACATCGCTACCACACTTCAACAGCTCAACATGATTGATTTCCAGGATGGCAGGTTTCTAATCATCCGAAGATATCAGCTGATTGAGGAGCACATGGATAGACTGAGAGTAAAGCCAAGGCTTCATGAGGTTGACCCTGATTGCCTGTGCTGGACTCCAGTTTCAGTCTGCAAAAGCCCACCAGGGGAGCTGAAGAGTGCTATGGCACAGGCAAGAGACCGTCGCGCAAACTGTAGTGCATCAATCAGGAATTTGTCAATGGGGATGGGCTACACCAACACAAGACCTCCACTAACCAAGTGCAAGAACTTTAGCAGAAGATACTCGGACCCACTGTTTGAAAACAGCGCTGGGAAAGATTTTGAAGTGAGTGAAGACAGCAGCAGTGATGATGAAGACAACGCTGGTAATGAAGATAATGCAATCAAGTCCCAGACTGGGCAGGGGCTCAAGCGAAAGTGGGCACCAAATCTGCGACGGAAGAGAGGGCGGAGGAGAACACGAATCAACAGCAGTGTCACGACCGAGACCATCTCAGAGAGAACAGAGGTGCTAGATGAGCCATTTGAAAACTCTGATGTAGAAAGCCCTCTGCCACAGCCCAGCAGGAGGGACGGCAGCGAGGATGAGGAAGAGGAGAAAAACCAGAGAGTAGCCGTGCGTCGGCCTGGAAGACCAAGGAGACATGGAGAAGACAATCACTCAAATCAATCTAAAGGAGGGAATGTGGAAGCAGTAAAAAAGGACAATCCTCGACCTGTAAAACGGAAGAAAGGCTGGCCCAAAGGTGTCAAAAGAGGCCCTCCCAAATGGAGACTAAAGGAGCGCAAAATGGGCTTTAAGCTCAACCTCTACACACCTCCTGAGACACCAATGGTCACAGTGGAGCAGGAGCAAGAGGAGGAGCAGGATGCCAGCCCTGCCTCATTCTCAGAACCATGCGAGACCTTCAGAGAGCCCAGGCCAGAGGACCCAGAACTGGACACCTGCATTTCAGAGCCCCACAGTCCAGAGCCACCAGAGTCTCACAAAGTAAATGAGGATGAGTCGACAGACAAGTCTGACACGGTGGAAAATTCTCCCTGTGCTGATGAGACAAGTGAGACAACATCAGGTCCAATAGATGCTGCTGAACAGTCAACTTTAAATACAGAGGAAGTCAAGGACCTGAAGCCAGAGGGTGAAGCAGAAGGCAGGGTTGGTAAGGGCTCGGGTGAACGAGACGAGGAAGAGGATGAGGACGAAGAGCCAGAACCATCTCATGTGGATGATCATGATGCAGATGATGAAGATGATAGCCATGAACAAAGAATAGAGGACCCAGTGCCACTAACAGAAAAAGATCTTACTGAAGACCCAGAGCCAGAGCTTGCATCTGAAAGCACTCTTGTGAGCTTGGGCATTCGACAGGGAGATACTGTGGACTCGGATCATCCTCCAGACTCGGAAACCGAGGAAGAGGATAACTGTCAGAGGCCCGAAGAAAGGCATATGGGCCCGTTGACCCCTGCAATAAAAGAAGACCATAACATTTGCCCTGAGCTTGACATGGAGACTGCACAAGCTGTGCAGTCTCTGACTCAAGAGTCTGAGCAAGAGAGGCACTTTCAGGACTGTGTGGAGACTCAGGAGGCCTGCCACAGCCTACAGCGGTATGTTCACGTCGAGCAGAGCCCTCAGATGACTCCCGTGGACGACTGCCAGCAGTCAGATCACAGCAGCCCTCTGTCTTCTGTCCATTCTCACCCGAGCCAATCTGTACGATCAGTCAATAGTCCAGCGGTGTCCATTTTAGAAAATGGCTACACACAGATTAGCCCCGATCAGGGCACCGTCTCGGTGCACTCGCTTCATAACAACATGGAGACAAGCCCAATAATGGATGTGCCCTCGGTGTCGGACCATTCTCAGCAGGTGGTGGACAGTGGTTTCAGTGACCTAGGTAGCATTGAGAGCACCACTGAGAATTACGAGAATCCCAGCAGTTATGACTCCACGCTGGGTAACAGCATTTGTGGCACGGGAGCAGGAGCAGGCGCCTCCTCCCAGAGCAGCTGTTCCTATGGCAACCTCTCCTCCGGTGGCAGCCACAGTCAGAGCAGCTGTGCTGTGTCCCAGCAGATGGCCGGTCCTGTGCTGTCCGACATCCCAGAATCCAACAACCCCTCTAGCAACCTGGGTCTGTATGACCGAATGGGCCAGGGAGAGTATGGAGGTGGACACTATGGTCAACCCTCAGCTACATTCAGCCTGCATAAGCTACAGCAACTCACCAATACCATCATGGACCACCCCTTGCCCTTCAGCCATTCTGCCTCGCACTCCATCTCATCCTATGCAAACAACAACGGATCGTTGTCAACGCAGCTCGGTCCTCACAATCCTGCGCTGGTTTCTCTGTCGCAACCTGGTGGAGGTCCTCAGTCGCAGGCTACTGGGACTCCTCCGCCCAATATGACTCCACCGCCCATGATGCTGCAGCGCAACATGGCTACACCCAACATGAACCTGGCCCCGTCTCAGAGACTGCAAACACAAATGGCCTCTAAGAATCACCACCCCATGTCCATGCCCTCTATCCGCTCCAAATCGGCCCCTCTGCCGCCCCACCACCAGCAGCAGATGTATGGTAGGGGTCCTCAGACTGTAGCCATGCAGGCTCCTGGGAGGACGCTGGCCATGCCGCCGCGGATGAACATGGGGGTGAACCTCATGCCCGCTCCGGCTTACAACGTCAACTCGATGAACGTGAACGTCAATATGGCGATGAACACTTACAGAGTGACGCAGCCTATGATGAACGGGGGCTACCATGGCAATCCTACCTATATGAATCAATCTCCACAGTACTCTATGCAGATGGGCATGATGGGTACCCAGCCTTACCCTCAGCAGCCCATGCAGGCTCCTCCCCATGGCAATATGATGTACAGCCCAGCAGGTCATCATGGTTATGTGAATACCGGCATGTCCAAACAACCCTTAAACGGGCCTTATATGAGACGATAATCAACGACCTGAAAGTAAGGGTCATGATGTTGCAAAGTCAGCTAGTTGACTTGAGGTATTTAGTTTGTTCTTATTTTCATGGTTAATGTTCGCTTTTATGGATCTTTCTAAAAGAACCAGCACTTGGTAAGAATGCAAAAAAAGTTTTGTTTATTGGCTAAATTTTAGCTTTTTTCCCCTATTTATGGGAAGCCTTACAGCATAAGATTTAAAATGTAACATTTGTGTAAGCATAAATCTCCCCTGAACTGCATTGCAGTTGAATGGAGGTTACATTTTCTTTAAGTTGGAACCTGCATTATGGAACCTTTAAATGTGCCTGCATTGTATGTTTTTGGACAAAAGAGCCTTTTCAATGTACCTTTAGCAATCGCAAGGTTATATATGTAAGTCTGTACTCATGCCTTCATATTATTTAAATTATTGTAAATCTACTTTTATATTTTTTTAAATGTAAGGTTATACTTAGCATGCTATAACGTCTTTGTTAGTGACAGTGCATCAAAGTAGTACTGTACAGTGTTGTGCTTAATAGCAAGCAATTTTATATTAAATGTATGGCCTTGGTTAGGTTTCCCTCGTATGGAAGGAAAAATTAAACTCTATTTTTGTTGATTCTAATACTGTAAAGATTTGAAAAAAATCGTCATGTTCGGCTTGGAAGGTTCTATTGCTAATTGTGTATAATTTGTTACTTTATAACAAGTTTCTTTACCTGAGGCAGCTTTCTGTTTTTATACAATTTAAAGCAATTTCTGTCACAATAGCAAAGAACAGTCAATGTCAGTATTTGTACATGTAGAAATCTAAATCAAGGGGGAAGGGTAAACGAAAACATTTCAAATGGGGCAGAGTTGCAAAATTATTATGAGTGTCAATTTACTCCAAAGTTGGTCTTTTATGAAATGCCTTTAAACTTACATTTTCATTCCATCTGTAGATTTTTTTTATCTTTATAAAACATCTGATTTATATTTTACTGAAATGTAGAGCAGTAGCCTTGTTGATAGACAAAACAGATGGCATGTAAAAAGGTAAATTGTATCGTGTCTGTTTGTATAGCTTATTTTGTAGCCTTTGTACCTGTACAGAATGGCAGTTTGACGTAAGAGGGATATCCTGACTGTACTAATTAACAGAGCAACAGTCCTGTATTTATGAGTTACCTTTTTAGTCGGTCACTTAAATGCTGTACATTTTAGCAGAAA

Function

symbol description
kat6b Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation; nucleosome assembly; and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Is expressed in forebrain. Human ortholog(s) of this gene implicated in bipolar disorder; blepharophimosis-intellectual disability syndrome, SBBYS type; breast cancer; and leiomyoma. Orthologous to human KAT6B (lysine acetyltransferase 6B).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11306 MYST4, KAT6B; histone acetyltransferase MYST4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12381049_12417489.mRNA True 7825 mRNA 0.47 20 12380192 12418697

Neighbor

gene id symbol gene type direction distance location
CI01000012_12378120_12378419 NA coding upstream 1530 12378120 ~ 12378662 (+)
CI01000012_12292583_12371612 ADK, ADKA coding upstream 8580 12292583 ~ 12371612 (+)
CI01000012_12270454_12276521 NA coding upstream 103567 12270346 ~ 12276625 (+)
CI01000012_12220568_12234927 NA coding upstream 144929 12219998 ~ 12235263 (+)
CI01000012_12173747_12212480 VCLA, VCL coding upstream 166907 12173388 ~ 12213285 (+)
CI01000012_12440074_12465741 SLKA, SLKB, SLK coding downstream 21377 12440074 ~ 12466032 (+)
CI01000012_12489485_12490402 NA coding downstream 70590 12489287 ~ 12490431 (+)
CI01000012_12505469_12509093 ERLIN1, ERLIN2 coding downstream 86772 12505469 ~ 12509316 (+)
CI01000012_12536242_12538668 NA coding downstream 117379 12536076 ~ 12538728 (+)
CI01000012_12585843_12587149 NA coding downstream 167146 12585843 ~ 12587209 (+)
G76318 NA non-coding upstream 211737 12168168 ~ 12168455 (+)
G76316 NA non-coding upstream 214960 12164961 ~ 12165232 (+)
G76315 NA non-coding upstream 215781 12164183 ~ 12164411 (+)
G76306 NA non-coding upstream 269546 12110427 ~ 12110646 (+)
G76299 NA non-coding upstream 303068 12076910 ~ 12077124 (+)
G76327 NA non-coding downstream 14202 12432899 ~ 12433158 (+)
G76222 NA non-coding downstream 14972 12433669 ~ 12435061 (+)
G76230 NA non-coding downstream 17334 12436031 ~ 12436325 (+)
G76244 NA non-coding downstream 18415 12437112 ~ 12437490 (+)
G76328 NA non-coding downstream 18997 12437694 ~ 12437915 (+)
G75533 NA other upstream 1234453 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 2155905 10223697 ~ 10236276 (+)
G73578 NA other upstream 4012565 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4572337 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6455887 5922385 ~ 5929186 (+)
G76385 NA other downstream 212058 12630755 ~ 12675666 (+)
G76374 NA other downstream 326834 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 596809 13029435 ~ 13038899 (+)
G76645 NA other downstream 1233162 13651859 ~ 13652234 (+)
G76656 NA other downstream 1284790 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G153957 NA non-coding NC_048566.1 CM023220.2 49911230 ~ 49911516 (-)
bowfin (Amia calva) G140030 NA unknown CM030139.1 CM030139.1 9325488 ~ 9330464 (+)