gtf2b (gtf2b,LOC107693714,LOC107585659,LOC107718116)


Basic Information

Item Value
gene id gtf2b
gene name gtf2b,LOC107693714,LOC107585659,LOC107718116
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10114573 ~ 10119939 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263585.1
TCCATTGTGTTCACCAGAGAGTCACTGCCGTGGACAACAGACAGTAACAGTATGGCGTCGACGAGCCGTGGAGACTCTCTTCCCAAGGTGCAATGCCCCAATCACCCTGATGCAATATTGGTGGAGGACTACAGGGCAGGAGACATGATCTGTCCTGAATGTGGCCTTGTAGTAGgtgACCGTGTAATTGATGTCGGGTCAGAGTGGAGAACGTTCACCAATGAGAAGGCAACTAAAGACCCGTCTCGTGTTGGTGATGCTCAGAACCCTCTCCTCAATGGAGGAGACCTCACCACCATGATCAGCAAAggaacaggtgCAGCAAGCTTTGATGAGTTTGGAAACTCCAAATACCAGAATCGGAGAACCATGAGCAGCTCCGATCGAGCCATGTTGAATGCCTTCAAGGAGATCAGCACCATGGCCGACAGGATCAACCTCCCCAGAAACATCATCGACCGAACGAACAACTTGTTCAAACAGGTTTACGAACAGAAGAGTCTGAAAGGCAGAAGTAATGATGCGATTGCTTCGGCCTGCCTTTACATAGCCTGCAGACAGGAGGGTGTCCCCAGAACATTTAAAGAAATATGTGCCGTGTCTCGGATCTCGAAGAAGGAGATTGGCCGCTGCTTCAAGCTTATTCTGAAGGCTCTTGAGACGAGCGTGGACCTCATTACAACCGGCGACTTCATGTCACGTTTCTGCTCCAACTTGGGCTTGCCCAAACAGGTGCAGATGGCGGCCACTTACATCGCCAGGAAGGCCGTCGAGCTGGACTTGGTTCCAGGCCGCAGCCCGATCTCAGTGGCAGCTGCAGCCATTTATATGGCCTCTCAAGCGTCTGCTGAGAAAAAGACACAGAAGgAGATCGGGGACATCGCTGGAGTGGCAGACGTCACCATCCGTCAGTCCTACCGTCTTATTTATCCCCGCGCCGCCGATCTCTTTCCTCCAGACTTCAAGTTCGACACACCAGTGGATAAACTGCCTCAACTGTGAACACCCACGTGCCCCTCACTCGCCGCTCTTTGTACTTTACGAATTTTTTGCCCTTTTCTCTTTAAAATTCGCAAGTTTTGGTCTCCCCCTCCCGTGAAGGCCCAAGCCTTTTGAAAAGACGACGGCAGGGATTCGACAAAGTACAGAAGACACATTCCAAGTTTAATCGCAGATTGCAGGCTGTACtttcatttgtgtgtatataaattgtACATATGTCTAAGTGAGAATTTGATGGTTGCAACTAGGCATATTTCTTActgtaacattttcttttgtagGAAATGATTTTGTTAGCttgtttgcattatatttagtaacttaataaatgcttttcagaAAAGCATGGTGAAGATCTCGGAAATCCCCAGAACAGGTGTACAAATACCCCAAGCATCGAAAGCGTGTAGCTCACAAATGGTTTTATTTCccccttttttatttcatgaggGGAATGGTATGAAGCAGAAGTTTCTGTTCGTGTGTTTCTGTTCCTGTATCCACAGCTCAGTTATTATAAAGATTTCGTGAAACGCCCGAGAATCCTTTTTGAAGTGACAAATAAACCATTTACAACCTG

Function

symbol description
gtf2b Predicted to enable several functions, including RNA polymerase II core promoter sequence-specific DNA binding activity; RNA polymerase II general transcription initiation factor activity; and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II core complex assembly; protein acetylation; and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within transcription preinitiation complex assembly. Predicted to be part of transcription preinitiation complex. Predicted to be active in nucleus. Orthologous to human GTF2B (general transcription factor IIB).

NR:

description
PREDICTED: transcription initiation factor IIB

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006413 translational initiation biological_process
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263585.1 True 1582 mRNA 0.47 7 10114573 10119939

Neighbor

gene id symbol gene type direction distance location
znf644a LOC107722621,LOC107693692,LOC107589847,LOC107586139 coding upstream 7149 10096409 ~ 10107424 (+)
cldn18 LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887 coding upstream 34628 10078400 ~ 10079945 (+)
LOC122324805 LOC107695158,LOC107722506,LOC107586159,LOC107691708 coding upstream 37239 10075157 ~ 10077334 (+)
stk25b stk25b,LOC107693719,LOC107585675,LOC107722570,LOC107589848,LOC108432500,LOC108278137 coding upstream 52857 10055965 ~ 10061716 (+)
thap4 thap4,LOC107586721,LOC107693706,LOC107589912,LOC107691505 coding upstream 65467 10046848 ~ 10049106 (+)
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding downstream 48301 10168240 ~ 10198276 (+)
LOC122355329 cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110 coding downstream 92952 10212891 ~ 10215867 (+)
rab2a rab2a coding downstream 205119 10325058 ~ 10336681 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding downstream 217584 10337523 ~ 10378222 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding downstream 302797 10422736 ~ 10425446 (+)
G10819 NA non-coding upstream 50759 10058532 ~ 10063814 (+)
G10753 NA non-coding upstream 98751 10014559 ~ 10015822 (+)
G10752 NA non-coding upstream 100207 10011937 ~ 10014366 (+)
G10738 NA non-coding upstream 103827 9989143 ~ 10010746 (+)
G10838 NA non-coding downstream 21403 10141342 ~ 10141971 (+)
G10883 NA non-coding downstream 89624 10209563 ~ 10209851 (+)
G10902 NA non-coding downstream 271730 10391669 ~ 10391956 (+)
G10903 NA non-coding downstream 272754 10392693 ~ 10393150 (+)
G10901 NA non-coding downstream 301998 10421937 ~ 10539990 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 197712 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 363361 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 942658 9162611 ~ 9171915 (+)
G10212 NA other upstream 2006796 8106865 ~ 8107777 (+)
G10108 NA other upstream 2532188 7504622 ~ 7582385 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 38593 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 542790 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 591191 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 999915 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 1109821 11229760 ~ 11264234 (+)

Expression


Co-expression Network