RNA id: XM_043263585.1


Basic Information

Item Value
RNA id XM_043263585.1
length 1582
RNA type mRNA
GC content 0.47
exon number 7
gene id gtf2b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10114573 ~ 10119939 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCATTGTGTTCACCAGAGAGTCACTGCCGTGGACAACAGACAGTAACAGTATGGCGTCGACGAGCCGTGGAGACTCTCTTCCCAAGGTGCAATGCCCCAATCACCCTGATGCAATATTGGTGGAGGACTACAGGGCAGGAGACATGATCTGTCCTGAATGTGGCCTTGTAGTAGgtgACCGTGTAATTGATGTCGGGTCAGAGTGGAGAACGTTCACCAATGAGAAGGCAACTAAAGACCCGTCTCGTGTTGGTGATGCTCAGAACCCTCTCCTCAATGGAGGAGACCTCACCACCATGATCAGCAAAggaacaggtgCAGCAAGCTTTGATGAGTTTGGAAACTCCAAATACCAGAATCGGAGAACCATGAGCAGCTCCGATCGAGCCATGTTGAATGCCTTCAAGGAGATCAGCACCATGGCCGACAGGATCAACCTCCCCAGAAACATCATCGACCGAACGAACAACTTGTTCAAACAGGTTTACGAACAGAAGAGTCTGAAAGGCAGAAGTAATGATGCGATTGCTTCGGCCTGCCTTTACATAGCCTGCAGACAGGAGGGTGTCCCCAGAACATTTAAAGAAATATGTGCCGTGTCTCGGATCTCGAAGAAGGAGATTGGCCGCTGCTTCAAGCTTATTCTGAAGGCTCTTGAGACGAGCGTGGACCTCATTACAACCGGCGACTTCATGTCACGTTTCTGCTCCAACTTGGGCTTGCCCAAACAGGTGCAGATGGCGGCCACTTACATCGCCAGGAAGGCCGTCGAGCTGGACTTGGTTCCAGGCCGCAGCCCGATCTCAGTGGCAGCTGCAGCCATTTATATGGCCTCTCAAGCGTCTGCTGAGAAAAAGACACAGAAGgAGATCGGGGACATCGCTGGAGTGGCAGACGTCACCATCCGTCAGTCCTACCGTCTTATTTATCCCCGCGCCGCCGATCTCTTTCCTCCAGACTTCAAGTTCGACACACCAGTGGATAAACTGCCTCAACTGTGAACACCCACGTGCCCCTCACTCGCCGCTCTTTGTACTTTACGAATTTTTTGCCCTTTTCTCTTTAAAATTCGCAAGTTTTGGTCTCCCCCTCCCGTGAAGGCCCAAGCCTTTTGAAAAGACGACGGCAGGGATTCGACAAAGTACAGAAGACACATTCCAAGTTTAATCGCAGATTGCAGGCTGTACtttcatttgtgtgtatataaattgtACATATGTCTAAGTGAGAATTTGATGGTTGCAACTAGGCATATTTCTTActgtaacattttcttttgtagGAAATGATTTTGTTAGCttgtttgcattatatttagtaacttaataaatgcttttcagaAAAGCATGGTGAAGATCTCGGAAATCCCCAGAACAGGTGTACAAATACCCCAAGCATCGAAAGCGTGTAGCTCACAAATGGTTTTATTTCccccttttttatttcatgaggGGAATGGTATGAAGCAGAAGTTTCTGTTCGTGTGTTTCTGTTCCTGTATCCACAGCTCAGTTATTATAAAGATTTCGTGAAACGCCCGAGAATCCTTTTTGAAGTGACAAATAAACCATTTACAACCTG

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006413 translational initiation biological_process
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16060 lncRNA upstream 50759 10058532 ~ 10063814 (+) True G10819
TU15980 lncRNA upstream 98751 10014559 ~ 10015822 (+) True G10753
TU15979 lncRNA upstream 100207 10011937 ~ 10014366 (+) True G10752
TU15953 lncRNA upstream 103827 9989143 ~ 10010746 (+) True G10738
TU16087 lncRNA downstream 21403 10141342 ~ 10141971 (+) True G10838
TU16057 lncRNA downstream 38614 10158553 ~ 10161809 (+) True selenof
TU16166 lncRNA downstream 89624 10209563 ~ 10209851 (+) True G10883
TU16203 lncRNA downstream 271730 10391669 ~ 10391956 (+) True G10902
TU16204 lncRNA downstream 272754 10392693 ~ 10393150 (+) True G10903
XM_043258511.1 mRNA upstream 7149 10096409 ~ 10107424 (+) False znf644a
XM_043258504.1 mRNA upstream 7149 10096421 ~ 10107424 (+) True znf644a
XM_043224583.1 mRNA upstream 34628 10078400 ~ 10079945 (+) True cldn18
XM_043219487.1 mRNA upstream 37239 10075157 ~ 10077334 (+) True LOC122324805
XM_043224595.1 mRNA upstream 52857 10055965 ~ 10061716 (+) True stk25b
XM_043223876.1 mRNA downstream 38593 10158532 ~ 10161778 (+) False selenof
XM_043223700.1 mRNA downstream 48301 10168240 ~ 10198276 (+) True fam110b
XM_043223707.1 mRNA downstream 48301 10168240 ~ 10198276 (+) False fam110b
XM_043223715.1 mRNA downstream 48317 10168256 ~ 10198276 (+) False fam110b
XM_043253491.1 mRNA downstream 92952 10212891 ~ 10215867 (+) True LOC122355329
XR_006247735.1 other upstream 197712 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 199082 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 363361 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 942658 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2006796 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 591191 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1120187 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1219924 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1376421 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1376421 11496360 ~ 11498937 (+) False mast3a

Expression Profile