RNA id: XM_043219487.1


Basic Information

Item Value
RNA id XM_043219487.1
length 2178
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC122324805
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10075157 ~ 10077334 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCGCTCACGCGCTGATTGGGCACGAGGTGATGATGGTGTCAGGGCGCGCGCTCGTCGCTGCAAAGCTTTCTTTGAAACTCTCAGAGATTTGAAACAAACATCTCACAAACCAAGCAGTCGTTCTCACACACTTCAGTGccagtggcaaaaaaaaaaataacaacaattctGCCTTTTATACCCAGCCGCGCGTCTCATCAGAGGAGGAACCCTCTCTTTCCACAGATGATTTCGCCACACTTTCAGGTGttatagaaactttttttttcaattccgTGACGCAAAGCAAATGAACTCGAGGAAGACGATGAAGCAGCCCACGGAGCACATCAAGAGACCAATGAACGCGTTCATGGTTTGGTCGCGAGGTCAGAGAAGACAGATGGCACTGGAGAATCCAAAGATGCACAACTCCGAGATCAGCAAGAGACTCGGCGCCGAGTGGAAGCTGCTCTCCGAGGCTGAAAAAAGACCTTACATCGACGAGGCCAAAAGACTACGCGCCCAGCACATGAGGGAGCATCCAGACTACAAATACCGACCGAGACGAAAACCTAAAGGACTGCTGAGGAAAGACTCGCTGGTGACTTTACCGCGTCACGGCGAGCGGGAACTTCACGCGCTCTCGCGTCTGGACAAACCTCGAGCCCTTCATTCAGCCGCGTCTCTGACGCATCCTTTCTTGGAGCCGAGTCGGTCTGCCGTTAACCCCGCTCCCACAGCTTTTCAACACGAAAAACTTGCTTTAACCCCGGGCTCGTTGGCTCTGTCTTCAGCTTTTGGCTATCAGAGCGGACACCGCTCCTTCGGGAGTCAGTACGCGCACACTCACCTGTCACCTGCAAACCCCGGATACCTGCTGCCCTGTAACTGTTCGCCCTGGTCTTCCTCCAGTCTCGCGCCTCCGCTTGCCTATATAGTGTTTCCAGGTATGAGCAAGACCGCGGTCAGCTCCACAGCGCTGTGACTCAGTCATTAAAATCTCATTAGGAGCCTTTTTTTAAGAGATTGGTCTTTTCTCAGTTCGAGCGCAGCTTGAATAAATGTTGATTCGAATAGGCTACGTTCagctattattaataataataattgtatttatttgtttgtatgcgAGATGTTTGCTTTCACATTGATTTGTAAAGTTCATTTGCTATTGCTAATGATAAACGTTCCTGCTTCGGAGCCAAAGAATAAGGTGAACACGATCAAATTCCAgacagtgagtaaatgatttgaATGGGCCAGTCTTTGTAGGAtgacatttgtgaccctggacaacAAAACTAGTCAGAAGTGTCGGTTTTGTGAAACAGAGCTTTTGATATCACCTGAAAGCTGGATCAATAAACTTTTATTGTATGGtttgttaaaacaatatttggaaaatctggaatctaagggTCCAAAacaaaatcgcctttaaagttgtccaaatgaagtcctcaGCTATGCATAATcaaataatgatatatttacagtagcaaatttacaaaatatcatgtcctaatgatttttggcatacaGTGTATTATTGGCTGTTCCTACAAGTGCttacgactggttttgtgttccagggtcacaCTTTATCTTTACTTGAAAATATGTAGGCTATATAAATGAATGGAGTGAATAActcattcaaatacattttctacacGCTAAATtgccaaaaaacaacaacacacacacacacacacacacacattacattatgCTACCACTTTAATATGACCTGCTGATTTGTATGTCCAGTATCTGTAGGTATTTTTAGCAGTAACTAGAAGTACAGTACAGCATgcacatttgaaataaaacacttgtttATTCAAAACGTCCTGTTAACCTGCTTTATACtcctacaaaatattttaatattgtacaaCATAACCAACATTTTTACTTACATTTGATTTGACCTAactaaaaagtttaataattgCTAGTTATTGACATTGGTCTTATGATTCATCCACAAGCTGTTATATGAAGCATTTGACCGCATTCAAAATCTGTGACTGAAAACCTTAGGGCAAAAAACACTGTTATCGttaacttttaaattgtaaacaaaTTGTCAATTTTCTGGTAAGTGCTTGTCTGTTCTGTTTTGCATAATAAAGATTTTGCCATTCCATGGTTCCAACAAATGCAATACCTTTGTGCTTTGCCATAGTT

Function

GO: NA

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16060 lncRNA upstream 11343 10058532 ~ 10063814 (+) True G10819
TU15980 lncRNA upstream 59335 10014559 ~ 10015822 (+) True G10753
TU15979 lncRNA upstream 60791 10011937 ~ 10014366 (+) True G10752
TU15953 lncRNA upstream 64411 9989143 ~ 10010746 (+) True G10738
TU15974 lncRNA upstream 81762 9992784 ~ 9993395 (+) True G10749
TU16087 lncRNA downstream 64008 10141342 ~ 10141971 (+) True G10838
TU16057 lncRNA downstream 81219 10158553 ~ 10161809 (+) True selenof
TU16166 lncRNA downstream 132229 10209563 ~ 10209851 (+) True G10883
TU16203 lncRNA downstream 314335 10391669 ~ 10391956 (+) True G10902
TU16204 lncRNA downstream 315359 10392693 ~ 10393150 (+) True G10903
XM_043224595.1 mRNA upstream 13441 10055965 ~ 10061716 (+) True stk25b
XM_043253597.1 mRNA upstream 26051 10046848 ~ 10049106 (+) True thap4
XM_043253606.1 mRNA upstream 26051 10046848 ~ 10049106 (+) False thap4
XM_043219759.1 mRNA upstream 34304 10036539 ~ 10040853 (+) True agxtb
XM_043224123.1 mRNA upstream 113682 9942861 ~ 9961475 (+) True myo7bb
XM_043224583.1 mRNA downstream 1066 10078400 ~ 10079945 (+) True cldn18
XM_043258511.1 mRNA downstream 19075 10096409 ~ 10107424 (+) False znf644a
XM_043258504.1 mRNA downstream 19087 10096421 ~ 10107424 (+) True znf644a
XM_043263585.1 mRNA downstream 37239 10114573 ~ 10119939 (+) True gtf2b
XM_043223876.1 mRNA downstream 81198 10158532 ~ 10161778 (+) False selenof
XR_006247735.1 other upstream 158296 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 159666 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 323945 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 903242 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 1967380 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 633796 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 1162792 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 1262529 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1419026 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1419026 11496360 ~ 11498937 (+) False mast3a

Expression Profile