RNA id: TU16203


Basic Information

Item Value
RNA id TU16203
length 288
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G10902
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10391669 ~ 10391956 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGCCAGTTAGCTGTGTTCTGTGGCAGTTGACCAAGGTGTTGGTTAGCGGCTAAATGATAGCTAAAACAGATTAACCTGAGGTAACTCTGTCAAAACAgctttgtttgaaatgtttcattatAAACGATACGCACcgcctgaaaataaaaatcacacaatacTTACCTTAGGAGACGTCTGTTTcagattaaatttaaaaaataataaatctgatATACTTTGAGCCCACGGTTATCTTCTTTACCAACTACAAAATATTCTGCAGCTAACatactatattaatata

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16166 lncRNA upstream 181818 10209563 ~ 10209851 (+) True G10883
TU16057 lncRNA upstream 229860 10158553 ~ 10161809 (+) True selenof
TU16087 lncRNA upstream 249698 10141342 ~ 10141971 (+) True G10838
TU16060 lncRNA upstream 327855 10058532 ~ 10063814 (+) True G10819
TU15980 lncRNA upstream 375847 10014559 ~ 10015822 (+) True G10753
TU16204 lncRNA downstream 737 10392693 ~ 10393150 (+) True G10903
TU16198 lncRNA downstream 29981 10421937 ~ 10509519 (+) True G10901
TU16218 lncRNA downstream 53225 10445181 ~ 10482952 (+) True G10914
TU16224 lncRNA downstream 78165 10470121 ~ 10475283 (+) True G10918
TU16201 lncRNA downstream 97634 10489590 ~ 10509519 (+) False G10901
XM_043259223.1 mRNA upstream 13447 10337523 ~ 10378222 (+) True chd7
XM_043259240.1 mRNA upstream 13447 10337523 ~ 10378222 (+) False chd7
XM_043259233.1 mRNA upstream 13447 10338393 ~ 10378222 (+) False chd7
XM_043259687.1 mRNA upstream 54988 10325058 ~ 10336681 (+) True rab2a
XM_043253491.1 mRNA upstream 175802 10212891 ~ 10215867 (+) True LOC122355329
XM_043259588.1 mRNA downstream 30780 10422736 ~ 10425446 (+) False c2h7orf25
XM_043259593.1 mRNA downstream 30881 10422837 ~ 10425446 (+) True c2h7orf25
XM_043259710.1 mRNA downstream 33963 10425919 ~ 10446802 (+) True ralab
XM_043259697.1 mRNA downstream 34072 10426028 ~ 10431073 (+) False ralab
XM_043259704.1 mRNA downstream 34073 10426029 ~ 10431073 (+) False ralab
XR_006247735.1 other upstream 474808 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 476178 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 640457 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1219754 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2283892 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 319174 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 848170 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 947907 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1104404 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1104404 11496360 ~ 11498937 (+) False mast3a

Expression Profile