RNA id: TU16218


Basic Information

Item Value
RNA id TU16218
length 1309
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G10914
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10445181 ~ 10482952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttATTTGAAATTTATGTGGATTTATTTAAGTTTTCAAACATGTTCAAAACCCTTCGCACAgaacaaaatacacatttagatGTAATATCAAGCTGAAATCACAAAAGGACAATGCGTATTAGACAGTGTTCTGTTTTTAACCTCATAGCTCGATTTGTGGTTTGGATTTGCACTGTAGAATAAATACTGCTGTCAGAAATCACACATGTTCATAAGCTGATCATTAACATAACGAACTACTTATCTGCATTTGTGTACGCTTGCATTAGGCCGTATGCAACAATTTCACAAGGAGCTATAGTTTGATCAGCCTGTACCACGGAGAGCAGCTGCCTGGGCCATAAATGAAGCAGACAAACTCCAACAGAAGAGAACACATCAAAAATTACTGCTCTTTCCTTCAATCAAAGGACATGATCgtaaattgcataaaataacattgaaacCGAAGGCTGACGCTCGTGCCCGTGCAAAACTCTGTGAGAGACATGAGTGACTGTGCACGGTTCACAACGCTCGTGTACATTTCAGTCTTTCAAATGCCCGTGAGCAAGCAAGAATTGCAAAAAGACCTTTGAGAAAGGTCGCGAAATTGTGGCAGTTTTGAACCGGGGCCTTaatgcacagaaacacaaaccTGCGCCTATCAGGTCTCCTGTTAGACGTAAATGTATCTATATAGAGAGAGATTTGTCTTCTTGGTCAACGAAAGGTAAAATTAAAGTGACAAGCTACAGCGCTTTTGCCTCAAGTTAAACATTTTCTAGCAAAGCGCCGATGTGTCACGTAAAATACACTACACTTTCAACAGAAGACCTCCCGATCCTTTACATTGTGCTGAAGTTTATTGCGTTTCAGCAAAAGaaagtttatatttcataaacacCCTACCGTACACAACATAAGTCCAAAGCTTACTACCAAGAGCTGCAGCTCTTCTGAAGAACCGGGTACTTGCCTCAGTGTCCGTCTGGCAAATGTTTCCCATCTCTTAAATAACTGCTCTGACCCTCCGGGGTCACGGTTGAAAAAGGGGGTCCTCAGAAGGGCATACCACCTGTGATCTGTCGGGCCACCTGCTCCTCCGTACTCTCCTCCTTCTCACTGCCGCGCTCCTTGTTCCAGTCCTTCAGGCCCTTCGGCAGAGACGTGTCCTCATCCATGCTTCCCGTTCCCTCCACAAACTCCTCATAAGTTGACTTTTCAGCAAACGGCCTTCGGCCCAGCAGCTCCACCATGTCGTTCTTGTCCAGCACCTCTTTCTCCAGTAGACGTAGTGCCACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16204 lncRNA upstream 52031 10392693 ~ 10393150 (+) True G10903
TU16203 lncRNA upstream 53225 10391669 ~ 10391956 (+) True G10902
TU16166 lncRNA upstream 235330 10209563 ~ 10209851 (+) True G10883
TU16057 lncRNA upstream 283372 10158553 ~ 10161809 (+) True selenof
TU16087 lncRNA upstream 303210 10141342 ~ 10141971 (+) True G10838
TU16201 lncRNA downstream 6638 10489590 ~ 10509519 (+) False G10901
TU16191 lncRNA downstream 24382 10507334 ~ 10521710 (+) False G10901
TU16195 lncRNA downstream 24382 10507334 ~ 10539990 (+) False G10901
TU16200 lncRNA downstream 24382 10507334 ~ 10521710 (+) False G10901
XR_006252713.1 lncRNA downstream 84929 10567881 ~ 10569008 (+) True LOC122359526
XM_043259697.1 mRNA upstream 14108 10426028 ~ 10431073 (+) False ralab
XM_043259704.1 mRNA upstream 14108 10426029 ~ 10431073 (+) False ralab
XM_043259588.1 mRNA upstream 19735 10422736 ~ 10425446 (+) False c2h7orf25
XM_043259593.1 mRNA upstream 19735 10422837 ~ 10425446 (+) True c2h7orf25
XM_043259223.1 mRNA upstream 66959 10337523 ~ 10378222 (+) True chd7
XM_043259306.1 mRNA downstream 11149 10494101 ~ 10506040 (+) True plcd1b
XM_043259298.1 mRNA downstream 13473 10496425 ~ 10506040 (+) False plcd1b
XM_043259505.1 mRNA downstream 39409 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA downstream 39410 10522362 ~ 10528919 (+) False hhatla
XM_043259330.1 mRNA downstream 47656 10530608 ~ 10534110 (+) True klhl40a
XR_006247735.1 other upstream 528320 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 529690 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 693969 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1273266 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2337404 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 228178 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 757174 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 856911 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 1013408 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 1013408 11496360 ~ 11498937 (+) False mast3a

Expression Profile