klhl40a (klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425)


Basic Information

Item Value
gene id klhl40a
gene name klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10530608 ~ 10534110 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259330.1
TGAGGAGCTGAGGCCACACCGGAGCGTCACATCCTCCGCCATTTCTCTTTTAGAGTAACAGTGTTAATACAGTCAGTTCAGTTCTGCAGTGGGAGAGGACCAGGACACCCCTCCCTCCTACTGAAATATCAAATCAAACCATAACAAGATGGCCTCCATGTCAGTGGACCCAGTGACGGAGCCACGGATGTACCAGCAAACGCTCTTACAAGATGGGCTCAGTGATCTCCTGGATGCTAACAAGTTTGTGGACTGCGTTCTGAAGATCAAAGACAAAGAGTTTCCTTGTCATCGACTAGTGCTAGCTGCTAGCAGCCCTTACTTCAAAGCCATGTTCCTTTCGGACCTGGAAGAGAGCAAAAAGCGGGAGATTGTTCTAAAAGACATCGAACCTGGAGTCATGGGAATGATCCTGAGGTACATATACACCTCGGATATCAACTTGACTGAGCATAACGTCCAAGACATTTTCATGGCGGCCAACATGTACCAGATTCCATCAATcttcagcgtgtgtgtgtcgtaTCTGCAGCAGAAGCTGGTTCTCAGTAACTGCCTGGCCATCTTTAGACTGGGACTATTGCTGGACTGTCCACGTTTGGCTATGGAGGCTCGGGACTTCATCTGTGACCGCTATGCCCTCATCATTCGGGACCAGGACTTTCATCAGTTGGGTCCCAGCGAGTTGGCGGCTATAATCACATGTGACTCTCTGAATGTAGAACGAGAAGAGTTGGTGTTTGAGTCTCTCATGGACTGGGTGGAGTACGACACGGGCGAGAGATTGAATGACCTGCCTCAACTTCTACACTGTGTACGTTTCCGTCTTATGCCGAAAAGTTACTTTAAAGAGAAAGTTGAGGGCCACAGATTGCTCAGGACAAACCAGGAGCTCAAGAAGGAGCTTCAGATTGTCAAGGATGCACAGAAAGGACTGCTACACAGGATCAAAAGGGTCAAGAAGGAAGACGAGAAGGCAGATTCTGAGGACGAGGATGAGGAGGGTTTGCTGCCAGGAATCCTAAATGACAATCCACGTTTTGGAATGTTTCAAACAGAACTTTTATTGATGATTAGCGATACAGGAGCTGTAGCATATGACGTTGGTGCAAACGAGTGCTACGTGGCGTCTTCATCCACCGAGATCCCAAAGAACCATTGCAGTCTTGTCACGAAAGAAAATCAGATCTTTGTCGCTGGAGGTCTGATGTACAACGAAGAGAACAAGGAACAGCCGTTCAGTTCATACTTTCTTCAGTTTGATCCCATGAGCTCTGGATGGTTAGGGATGCCCTCACTACCAGACCCTCGCTGTCTGTTCGGTCTGGCGGAGGCTGAGAACTCCATCTATGTGGTGGGAGGAAAAGAGCTGAAGGAGGGAGAACGTGCACTTGATTCTGTTATGATCTATGACAGACAGTCATTCAAATGGGGAGAGTCAGACCCTCTTCCGTACGCAGTTTATGGACATGGAACTGTTTCACATAAAGGACTTGTCTATGTGATAGGTGGAAAAACTGAAAGCAAGAAATGCCTGAGGAGAGTATGTGTCTACGATCCCTCCAAGTTTGAATGGAAGGATCTGGCATCCATGAAAACCGCCCGCTCGCTGTTCGGCACTGctgttcacaaaaacaaaatctatgtGGCGACTGGAGTCACTGATAATGGCCTGACTAACAGTGTGGAGGTCTATGACATCGCCAGCAACTCCTGGTCAGAGTTCGTCGAGTTTCCTCAGGAGAGAAGCTCTCTTAACCTCATCGAACTAGGCGGCTGCTTGTACGCCGTGGGGGGTTTTGCTATGATGCCCAACGAGACCACAGAAAAACTGGAGCCCACTGAAATGAATGACATATGGAGGTTTGAGGAGGAGGAGAACTGCTGGAATGGGATCCTGAGGGAGATCAGTTACGCTGCTGGGGCCACGGTGGTTGGAGTGAGTCTGAACACCTTGAGATTCACAAAGATGTGATCTACAGCTGCAAACGACTGACAAAATACACTTATGCCACCCTCATCTTCATAAAAGAGCAATACATATTCCACTAAATCATTTGTCACAGACTTCACTTGTTTGTGATGGATCTTAAGGCATGTTTGATAAGTGTTTGATGCTGCTGTTCCAAAAAAGACTCAGCAGATGGAGACAAACACAAGaccatcttcttttttttttcataagaaTGCTTTGTTAGTCATTTTGGGTATGTTGAATAATTTGACTTATTTAAATAACCATGTACATTGATTTCTATCATtctattatgttattttagatGACAAACACAACTGAACATTTTACAATTATGACCAAGTACAATGTTCTTACAttcaaaaaagagaaataaatggcAGTGAATGAACAATAACCTAATATACTGTAGACAATGaccaaactaaaaaaacaagaacaacaaaCACAACTGTCTGTGGTAAATGTCATACACTCAAATATTGTCATACACCCTCCAAAGccacatgaaaataaaaaaaggtaaacgAATAGAAGGA

Function

symbol description
klhl40a Acts upstream of or within skeletal muscle fiber development and swimming. Predicted to be located in cytoplasm. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including eye; heart; integument; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in nemaline myopathy 8. Orthologous to human KLHL40 (kelch like family member 40).

NR:

description
kelch-like protein 40a

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0036268 swimming biological_process
GO:0030017 sarcomere cellular_component

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259330.1 True 2514 mRNA 0.45 6 10530608 10534110

Neighbor

gene id symbol gene type direction distance location
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding upstream 1689 10522361 ~ 10528919 (+)
plcd1b LOC107688433,LOC107722543,LOC107585437 coding upstream 24568 10494101 ~ 10506040 (+)
ralab ralab,rala,LOC107585502,LOC107718103 coding upstream 83806 10425919 ~ 10446802 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding upstream 105162 10422736 ~ 10425446 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding upstream 152386 10337523 ~ 10378222 (+)
bmi1b bmi1b,LOC107585379,LOC107688441,LOC107689401 coding downstream 50763 10584873 ~ 10590460 (+)
nebl nebl,LOC107722518,LOC107688530,LOC107718172,LOC107689428 coding downstream 77880 10611990 ~ 10616296 (+)
nrn1b nrn1b,LOC107722529,LOC107688533,LOC107589820 coding downstream 124491 10658601 ~ 10660461 (+)
rpp40 rpp40,LOC107688445,LOC107722637,LOC107689405 coding downstream 131795 10665905 ~ 10671812 (+)
oxsr1a oxsr1a,LOC107718088,LOC107589819,LOC107722611,LOC107585310,LOC107689410,LOC107688448 coding downstream 158400 10692510 ~ 10702785 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding upstream 47656 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding upstream 55325 10470121 ~ 10475283 (+)
G10903 NA non-coding upstream 137458 10392693 ~ 10393150 (+)
G10902 NA non-coding upstream 138652 10391669 ~ 10391956 (+)
G10883 NA non-coding upstream 320757 10209563 ~ 10209851 (+)
LOC122359526 NA non-coding downstream 33771 10567881 ~ 10569008 (+)
G11077 NA non-coding downstream 223946 10758056 ~ 10831642 (+)
LOC122359515 NA non-coding downstream 286001 10820111 ~ 10822197 (+)
G11106 NA non-coding downstream 362573 10896683 ~ 10897497 (+)
G11117 NA non-coding downstream 418940 10953050 ~ 10978280 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 368799 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 613747 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 779396 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1358693 9162611 ~ 9171915 (+)
G10212 NA other upstream 2422831 8106865 ~ 8107777 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 128619 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 177020 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 585744 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 695650 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 769568 11303678 ~ 11338469 (+)

Expression


Co-expression Network