G10914 (afg3l2,LOC107718155,LOC107688430,LOC107589831)


Basic Information

Item Value
gene id G10914
gene name afg3l2,LOC107718155,LOC107688430,LOC107589831
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10445181 ~ 10482952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16218
tttttttttttttttttttttttttATTTGAAATTTATGTGGATTTATTTAAGTTTTCAAACATGTTCAAAACCCTTCGCACAgaacaaaatacacatttagatGTAATATCAAGCTGAAATCACAAAAGGACAATGCGTATTAGACAGTGTTCTGTTTTTAACCTCATAGCTCGATTTGTGGTTTGGATTTGCACTGTAGAATAAATACTGCTGTCAGAAATCACACATGTTCATAAGCTGATCATTAACATAACGAACTACTTATCTGCATTTGTGTACGCTTGCATTAGGCCGTATGCAACAATTTCACAAGGAGCTATAGTTTGATCAGCCTGTACCACGGAGAGCAGCTGCCTGGGCCATAAATGAAGCAGACAAACTCCAACAGAAGAGAACACATCAAAAATTACTGCTCTTTCCTTCAATCAAAGGACATGATCgtaaattgcataaaataacattgaaacCGAAGGCTGACGCTCGTGCCCGTGCAAAACTCTGTGAGAGACATGAGTGACTGTGCACGGTTCACAACGCTCGTGTACATTTCAGTCTTTCAAATGCCCGTGAGCAAGCAAGAATTGCAAAAAGACCTTTGAGAAAGGTCGCGAAATTGTGGCAGTTTTGAACCGGGGCCTTaatgcacagaaacacaaaccTGCGCCTATCAGGTCTCCTGTTAGACGTAAATGTATCTATATAGAGAGAGATTTGTCTTCTTGGTCAACGAAAGGTAAAATTAAAGTGACAAGCTACAGCGCTTTTGCCTCAAGTTAAACATTTTCTAGCAAAGCGCCGATGTGTCACGTAAAATACACTACACTTTCAACAGAAGACCTCCCGATCCTTTACATTGTGCTGAAGTTTATTGCGTTTCAGCAAAAGaaagtttatatttcataaacacCCTACCGTACACAACATAAGTCCAAAGCTTACTACCAAGAGCTGCAGCTCTTCTGAAGAACCGGGTACTTGCCTCAGTGTCCGTCTGGCAAATGTTTCCCATCTCTTAAATAACTGCTCTGACCCTCCGGGGTCACGGTTGAAAAAGGGGGTCCTCAGAAGGGCATACCACCTGTGATCTGTCGGGCCACCTGCTCCTCCGTACTCTCCTCCTTCTCACTGCCGCGCTCCTTGTTCCAGTCCTTCAGGCCCTTCGGCAGAGACGTGTCCTCATCCATGCTTCCCGTTCCCTCCACAAACTCCTCATAAGTTGACTTTTCAGCAAACGGCCTTCGGCCCAGCAGCTCCACCATGTCGTTCTTGTCCAGCACCTCTTTCTCCAGTAGACGTAGTGCCACCTA

Function

symbol description
afg3l2 Predicted to enable ATP binding activity; peptidase activity; and zinc ion binding activity. Predicted to be involved in mitochondrial protein processing and protein-containing complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of m-AAA complex. Human ortholog(s) of this gene implicated in optic atrophy 12; spastic ataxia; spastic ataxia 5; and spinocerebellar ataxia type 28. Orthologous to human AFG3L2 (AFG3 like matrix AAA peptidase subunit 2).

NR:

description
PREDICTED: AFG3-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16218 True 1309 lncRNA 0.42 2 10445181 10482952

Neighbor

gene id symbol gene type direction distance location
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding upstream 19735 10422736 ~ 10425446 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding upstream 66959 10337523 ~ 10378222 (+)
rab2a rab2a coding upstream 108500 10325058 ~ 10336681 (+)
LOC122355329 cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110 coding upstream 229314 10212891 ~ 10215867 (+)
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding upstream 246905 10168240 ~ 10198276 (+)
plcd1b LOC107688433,LOC107722543,LOC107585437 coding downstream 11149 10494101 ~ 10506040 (+)
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding downstream 39409 10522361 ~ 10528919 (+)
klhl40a klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425 coding downstream 47656 10530608 ~ 10534110 (+)
bmi1b bmi1b,LOC107585379,LOC107688441,LOC107689401 coding downstream 101921 10584873 ~ 10590460 (+)
nebl nebl,LOC107722518,LOC107688530,LOC107718172,LOC107689428 coding downstream 129038 10611990 ~ 10616296 (+)
G10903 NA non-coding upstream 52031 10392693 ~ 10393150 (+)
G10902 NA non-coding upstream 53225 10391669 ~ 10391956 (+)
G10883 NA non-coding upstream 235330 10209563 ~ 10209851 (+)
G10838 NA non-coding upstream 303210 10141342 ~ 10141971 (+)
G10819 NA non-coding upstream 381367 10058532 ~ 10063814 (+)
LOC122359526 NA non-coding downstream 84929 10567881 ~ 10569008 (+)
G11077 NA non-coding downstream 275104 10758056 ~ 10831642 (+)
LOC122359515 NA non-coding downstream 337159 10820111 ~ 10822197 (+)
G11106 NA non-coding downstream 413731 10896683 ~ 10897497 (+)
G11117 NA non-coding downstream 470098 10953050 ~ 10978280 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 283372 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 528320 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 693969 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1273266 9162611 ~ 9171915 (+)
G10212 NA other upstream 2337404 8106865 ~ 8107777 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 179777 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 228178 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 636902 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 746808 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 820726 11303678 ~ 11338469 (+)

Expression


Co-expression Network