RNA id: XM_043259330.1


Basic Information

Item Value
RNA id XM_043259330.1
length 2514
RNA type mRNA
GC content 0.45
exon number 6
gene id klhl40a
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10530608 ~ 10534110 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGGAGCTGAGGCCACACCGGAGCGTCACATCCTCCGCCATTTCTCTTTTAGAGTAACAGTGTTAATACAGTCAGTTCAGTTCTGCAGTGGGAGAGGACCAGGACACCCCTCCCTCCTACTGAAATATCAAATCAAACCATAACAAGATGGCCTCCATGTCAGTGGACCCAGTGACGGAGCCACGGATGTACCAGCAAACGCTCTTACAAGATGGGCTCAGTGATCTCCTGGATGCTAACAAGTTTGTGGACTGCGTTCTGAAGATCAAAGACAAAGAGTTTCCTTGTCATCGACTAGTGCTAGCTGCTAGCAGCCCTTACTTCAAAGCCATGTTCCTTTCGGACCTGGAAGAGAGCAAAAAGCGGGAGATTGTTCTAAAAGACATCGAACCTGGAGTCATGGGAATGATCCTGAGGTACATATACACCTCGGATATCAACTTGACTGAGCATAACGTCCAAGACATTTTCATGGCGGCCAACATGTACCAGATTCCATCAATcttcagcgtgtgtgtgtcgtaTCTGCAGCAGAAGCTGGTTCTCAGTAACTGCCTGGCCATCTTTAGACTGGGACTATTGCTGGACTGTCCACGTTTGGCTATGGAGGCTCGGGACTTCATCTGTGACCGCTATGCCCTCATCATTCGGGACCAGGACTTTCATCAGTTGGGTCCCAGCGAGTTGGCGGCTATAATCACATGTGACTCTCTGAATGTAGAACGAGAAGAGTTGGTGTTTGAGTCTCTCATGGACTGGGTGGAGTACGACACGGGCGAGAGATTGAATGACCTGCCTCAACTTCTACACTGTGTACGTTTCCGTCTTATGCCGAAAAGTTACTTTAAAGAGAAAGTTGAGGGCCACAGATTGCTCAGGACAAACCAGGAGCTCAAGAAGGAGCTTCAGATTGTCAAGGATGCACAGAAAGGACTGCTACACAGGATCAAAAGGGTCAAGAAGGAAGACGAGAAGGCAGATTCTGAGGACGAGGATGAGGAGGGTTTGCTGCCAGGAATCCTAAATGACAATCCACGTTTTGGAATGTTTCAAACAGAACTTTTATTGATGATTAGCGATACAGGAGCTGTAGCATATGACGTTGGTGCAAACGAGTGCTACGTGGCGTCTTCATCCACCGAGATCCCAAAGAACCATTGCAGTCTTGTCACGAAAGAAAATCAGATCTTTGTCGCTGGAGGTCTGATGTACAACGAAGAGAACAAGGAACAGCCGTTCAGTTCATACTTTCTTCAGTTTGATCCCATGAGCTCTGGATGGTTAGGGATGCCCTCACTACCAGACCCTCGCTGTCTGTTCGGTCTGGCGGAGGCTGAGAACTCCATCTATGTGGTGGGAGGAAAAGAGCTGAAGGAGGGAGAACGTGCACTTGATTCTGTTATGATCTATGACAGACAGTCATTCAAATGGGGAGAGTCAGACCCTCTTCCGTACGCAGTTTATGGACATGGAACTGTTTCACATAAAGGACTTGTCTATGTGATAGGTGGAAAAACTGAAAGCAAGAAATGCCTGAGGAGAGTATGTGTCTACGATCCCTCCAAGTTTGAATGGAAGGATCTGGCATCCATGAAAACCGCCCGCTCGCTGTTCGGCACTGctgttcacaaaaacaaaatctatgtGGCGACTGGAGTCACTGATAATGGCCTGACTAACAGTGTGGAGGTCTATGACATCGCCAGCAACTCCTGGTCAGAGTTCGTCGAGTTTCCTCAGGAGAGAAGCTCTCTTAACCTCATCGAACTAGGCGGCTGCTTGTACGCCGTGGGGGGTTTTGCTATGATGCCCAACGAGACCACAGAAAAACTGGAGCCCACTGAAATGAATGACATATGGAGGTTTGAGGAGGAGGAGAACTGCTGGAATGGGATCCTGAGGGAGATCAGTTACGCTGCTGGGGCCACGGTGGTTGGAGTGAGTCTGAACACCTTGAGATTCACAAAGATGTGATCTACAGCTGCAAACGACTGACAAAATACACTTATGCCACCCTCATCTTCATAAAAGAGCAATACATATTCCACTAAATCATTTGTCACAGACTTCACTTGTTTGTGATGGATCTTAAGGCATGTTTGATAAGTGTTTGATGCTGCTGTTCCAAAAAAGACTCAGCAGATGGAGACAAACACAAGaccatcttcttttttttttcataagaaTGCTTTGTTAGTCATTTTGGGTATGTTGAATAATTTGACTTATTTAAATAACCATGTACATTGATTTCTATCATtctattatgttattttagatGACAAACACAACTGAACATTTTACAATTATGACCAAGTACAATGTTCTTACAttcaaaaaagagaaataaatggcAGTGAATGAACAATAACCTAATATACTGTAGACAATGaccaaactaaaaaaacaagaacaacaaaCACAACTGTCTGTGGTAAATGTCATACACTCAAATATTGTCATACACCCTCCAAAGccacatgaaaataaaaaaaggtaaacgAATAGAAGGA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0036268 swimming biological_process
GO:0030017 sarcomere cellular_component

KEGG:

id description
K10473 KBTBD5_10; kelch repeat and BTB domain-containing protein 5/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16191 lncRNA upstream 8898 10507334 ~ 10521710 (+) False G10901
TU16200 lncRNA upstream 8898 10507334 ~ 10521710 (+) False G10901
TU16201 lncRNA upstream 21089 10489590 ~ 10509519 (+) False G10901
TU16218 lncRNA upstream 47656 10445181 ~ 10482952 (+) True G10914
XR_006252713.1 lncRNA downstream 33771 10567881 ~ 10569008 (+) True LOC122359526
TU16293 lncRNA downstream 129223 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA downstream 129223 10663333 ~ 10664113 (+) False lyrm4
TU16444 lncRNA downstream 223946 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 286001 10820111 ~ 10822197 (+) True LOC122359515
XM_043259505.1 mRNA upstream 1689 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA upstream 1689 10522362 ~ 10528919 (+) False hhatla
XM_043259306.1 mRNA upstream 24568 10494101 ~ 10506040 (+) True plcd1b
XM_043259298.1 mRNA upstream 24568 10496425 ~ 10506040 (+) False plcd1b
XM_043259710.1 mRNA upstream 83806 10425919 ~ 10446802 (+) True ralab
XM_043259635.1 mRNA downstream 50763 10584873 ~ 10590460 (+) True bmi1b
XM_043259622.1 mRNA downstream 77880 10611990 ~ 10616296 (+) True nebl
XM_043259629.1 mRNA downstream 77880 10611990 ~ 10616296 (+) False nebl
XM_043259743.1 mRNA downstream 124491 10658601 ~ 10660461 (+) True nrn1b
XM_043259781.1 mRNA downstream 128619 10662729 ~ 10664114 (+) False lyrm4
XR_006247735.1 other upstream 613747 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 615117 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 779396 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1358693 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2422831 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 177020 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 706016 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 805753 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 962250 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 962250 11496360 ~ 11498937 (+) False mast3a

Expression Profile