RNA id: XM_043259635.1


Basic Information

Item Value
RNA id XM_043259635.1
length 2007
RNA type mRNA
GC content 0.43
exon number 10
gene id bmi1b
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10584873 ~ 10590460 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGCGCTGAACCATCGGGCGCTGTTTTTCGGCTCGCCGTGCGGGAGAAGTGCGCCTCTGGAATGTACCACCTATGACCGGAATCTGTGGATTTATCCGTGAATCGAATCGGAAAGGGTCGGCGAAGAGCGAGCTGCGTTAACCTATGTGCAATTGCGCAAGAAGGCCACAATGAGCACGGCGGTGAAACGTTAGAGCCATTGACAGCGTCTGCAGCTCATTCCAAGATGGCCGCTTCGGTAGCATTCATTTTTTGCTGATCGACTCTCAAGTTTCATTGTCTACCACAACAAAGCTAAGAAACCATCGCGAAACGCACGGGGTTTGCGAACTCTAATGACAATGCACCGAACAACGAGAATCAAGATAACGGAGCTAAATCCTCATCTGATGTGCGTTTTATGTGGAGGATACTTCATCGACGCGACCACCATCGTCGAATGTTTGCATTCGTTCTGCAAACTGTGCATTGTGAGGTACCTGGAGACCAGCAAATATTGTCCAATTTGTGATGTCCAAGTTCATAAAACGAAGCCTCTCCTCAATATCAGGTCAGATAAGACCCTTCAGGACATCGTCTACAAGCTGGTGCCTGGTCTGTTCAAAAATGAGATGAAACGAAGGAGAGATTTTTATGCAGAGCATCCAGTTGATGCTACTAATGGTTCTAATGAGGACCGAGGAGAAGTGGCAGATGAAGACAAGAGAATCATTGCTGATGATGAGATCATCAGTCTGTCCATTGAGTTTTTTGATCAGAACAAgATTGACAGTAAAGagggagaagaaaaagaaaccaCAAAAGAGGTGAATGTAAAGCGGTACTTGCAGTGCCCTGCGGCTATGACAGTAATGCATCTCAGAAAATTTCTCAGAAGTAAAATGGATATACCATGTACCTTTCAGATTGAAGTTATGTATGAAGACGAGCCTTTGAAAGATTATTATACTCTTATGGATATTGCTTATATCTACACATGGAGAAGGAACGGGCCCTTGCCATTGAAGTACAGAGTTCGGCCCGGttgcaaaaaaatgaagttAAGCGGCCCGAGGGATGATATGGCCGGTGGCAGAAGGCCTGATATAGAAAGCGACTCCAGCAGTGACAAACCAAACAGCCCGACTGCCGCCGCCGCTCCATCCACCTCCACCTCTCTGCCCAGCCCGAGCGCTCCGGTCCAGTCTTCACACCCCAGCTTCCCCCATATCTCCACCGTTAATGGAGTCTCTGCCAAAGTGGGCCACAATGGCCAAACTCCTTTCAGCAGCAAAGTCTGCAAAACTTCTCACAACGGCTCCAACTCCCTTGGGTGACTTGCTTATGGATGCCAAAGCCATCGACCCCCCCCCTTGCAAAACAGAGCTGTGATGTAGATGCTTTCTTTATAAACCACCTCTTcgatttttttatatcatttttaaatatatttgtttcatCACGGCGTGTGAAAACTTTGTAACACAGCAttgtttgtgttatattttgtattaattactATGGCATAACTAATATTGTGAAGAGTACCGGAGGGAAACTCAACAAGGAGAATGTATCTAGGTGTTTTTATAAACTCTTGTCTTGTTCATTTTAGATTAGAGCATCGATGTATATAAATCATTTCCTTGTCCATGAAGTCTTCAATAAAACACGTGGAGGCACGCGCAATGTTTTGATTATCCAGattgtattgattttattcGGATGAAACATGTAACACCAAATTAAACTCGCAAAGGGCAGGAATTCAGCGTCAGCACTGTCTCGGATAAACCCAGAAGGTGtcgtttaaaaataaagtctgCTAAGCTCAGAAGTAGTCCTTTTTTTCCGATTTGATATCTCGCGACGATAGATGGAAGGCTACGTGTACGGAAAGccgaaagtttttttttctcgcttTGCATTTCTGTTCAGCGGTTATTTGTTAAAGCCAATGTATCATTTACTGTTGTACAATATGAAACATTtgtctaaataaacattttacttttttattactaaa

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11459 PCGF4, BMI1; polycomb group RING finger protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252713.1 lncRNA upstream 15865 10567881 ~ 10569008 (+) True LOC122359526
TU16195 lncRNA upstream 44883 10507334 ~ 10539990 (+) False G10901
TU16191 lncRNA upstream 63163 10507334 ~ 10521710 (+) False G10901
TU16200 lncRNA upstream 63163 10507334 ~ 10521710 (+) False G10901
TU16201 lncRNA upstream 75354 10489590 ~ 10509519 (+) False G10901
TU16293 lncRNA downstream 72873 10663333 ~ 10665110 (+) True lyrm4
TU16295 lncRNA downstream 72873 10663333 ~ 10664113 (+) False lyrm4
TU16444 lncRNA downstream 167596 10758056 ~ 10831642 (+) True G11077
XR_006252711.1 lncRNA downstream 229651 10820111 ~ 10822197 (+) True LOC122359515
TU16501 lncRNA downstream 306223 10896683 ~ 10897497 (+) True G11106
XM_043259330.1 mRNA upstream 50763 10530608 ~ 10534110 (+) True klhl40a
XM_043259505.1 mRNA upstream 55954 10522361 ~ 10528919 (+) True hhatla
XM_043259514.1 mRNA upstream 55954 10522362 ~ 10528919 (+) False hhatla
XM_043259306.1 mRNA upstream 78833 10494101 ~ 10506040 (+) True plcd1b
XM_043259298.1 mRNA upstream 78833 10496425 ~ 10506040 (+) False plcd1b
XM_043259622.1 mRNA downstream 21530 10611990 ~ 10616296 (+) True nebl
XM_043259629.1 mRNA downstream 21530 10611990 ~ 10616296 (+) False nebl
XM_043259743.1 mRNA downstream 68141 10658601 ~ 10660461 (+) True nrn1b
XM_043259781.1 mRNA downstream 72269 10662729 ~ 10664114 (+) False lyrm4
XM_043259616.1 mRNA downstream 75445 10665905 ~ 10671812 (+) True rpp40
XR_006247735.1 other upstream 668012 9911628 ~ 9916861 (+) True znf414
XR_006247736.1 other upstream 669382 9911628 ~ 9915491 (+) False znf414
TU15832 other upstream 833661 9746594 ~ 9751212 (+) True arpc5a
XR_006252402.1 other upstream 1412958 9162611 ~ 9171915 (+) False olfm3b
TU15202 other upstream 2477096 8106865 ~ 8107777 (+) True G10212
TU16308 other downstream 120670 10711130 ~ 10718194 (+) True G10979
TU16555 other downstream 649666 11240126 ~ 11256764 (+) False kcnh2a
TU16565 other downstream 749403 11339863 ~ 11341111 (+) False mrpl34
TU16613 other downstream 905900 11496360 ~ 11500078 (+) False mast3a
TU16615 other downstream 905900 11496360 ~ 11498937 (+) False mast3a

Expression Profile